Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s22.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3240.38 26083.91
2. gga-mir-3533 ENSGALG00000027736 1193.76 9609.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
3. EEF1A EEF1A 1164.09 9370.51
4. RPLP1 ENSGALG00000030878 1164.09 9370.51 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. ENSGALG00000018384 ENSGALG00000018384 1127.44 9075.49
6. RPLP0 ENSGALG00000023294 1052.40 8471.45 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. MT-ATP6 MT-ATP6 994.22 8003.12
8. RPS23 ENSGALG00000015617 926.16 7455.26 ribosomal protein S23
9. RPS10 ENSGALG00000002813 911.61 7338.14 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL4 ENSGALG00000007711 898.23 7230.43 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. RPS28 ENSGALG00000024398 896.49 7216.43 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 885.43 7127.40 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. RPS8 ENSGALG00000010124 845.29 6804.29 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. GAPDH ENSGALG00000014442 741.74 5970.74 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. MT-ND5 MT-ND5 684.14 5507.09
16. RPS12 ENSGALG00000013990 683.56 5502.42 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. RPL8 ENSGALG00000016232 660.29 5315.10 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. RPL13 ENSGALG00000006179 655.06 5273.00 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
19. RPL7A ENSGALG00000003197 650.40 5235.49 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
20. RPL23A ENSGALG00000003966 628.30 5057.59 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
21. gga-mir-3527 gga-mir-3527 610.26 4912.38
22. RPL27A ENSGALG00000005948 608.52 4898.37 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPSA 594.55 4785.92 ribosomal protein SA
24. RPL27 ENSGALG00000002837 578.27 4654.87 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. TMSB4X ENSGALG00000026383 566.05 4556.50 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
26. RPL15 ENSGALG00000011290 562.56 4528.41 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPS15 ENSGALG00000015195 560.81 4514.32 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
28. RPL32 ENSGALG00000027142 556.16 4476.89 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
29. MT-CYB MT-CYB 553.83 4458.14
30. RPL26 RPL26 543.36 4373.86
31. RPL29 ENSGALG00000026978 535.22 4308.33 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
32. MDK ENSGALG00000008367 533.47 4294.24 midkine [Source:NCBI gene;Acc:423196]
33. RPS3A ENSGALG00000010077 529.98 4266.15 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
34. RPS11 ENSGALG00000017299 527.65 4247.40 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. RPS6 ENSGALG00000015082 525.91 4233.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
36. RPS2 ENSGALG00000005490 521.25 4195.88 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
37. PPIA ENSGALG00000028600 512.53 4125.69 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
38. RPL19 ENSGALG00000001658 508.45 4092.84 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
39. RPS21 ENSGALG00000005338 507.29 4083.51 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. RPS29 ENSGALG00000012229 489.26 3938.37 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
41. RPL21 ENSGALG00000027035 477.62 3844.67 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
42. RPL36 ENSGALG00000000474 459.59 3699.54 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. RPL38 ENSGALG00000001465 456.10 3671.44 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. SNRPD1 ENSGALG00000041334 455.51 3666.69 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
45. GNB2L1 ENSGALG00000000122 432.24 3479.38 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
46. RPS15A ENSGALG00000006771 432.24 3479.38 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. RPS16 ENSGALG00000026490 428.75 3451.29 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPS4 RPS4 421.77 3395.10
49. RPS27A ENSGALG00000036790 413.63 3329.58 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
50. RPL36AL ENSGALG00000004952 408.97 3292.06 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
51. MT-ND4 MT-ND4 397.34 3198.45
52. RPS14 ENSGALG00000004588 397.34 3198.45 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
53. RPL35 ENSGALG00000035677 395.59 3184.36 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
54. MT-CO1 MT-CO1 394.43 3175.02
55. RPL14 ENSGALG00000043379 390.36 3142.26 ribosomal protein L14
56. NME2 ENSGALG00000002932 379.30 3053.23 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
57. RPL12 ENSGALG00000008806 378.14 3043.89 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
58. ENSGALG00000026592 ENSGALG00000026592 376.40 3029.89
59. RPL18A 375.81 3025.14 ribosomal protein L18a
60. RPL5 ENSGALG00000005922 372.32 2997.04 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
61. RPS7 ENSGALG00000016392 366.51 2950.28 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
62. RPL24 ENSGALG00000015339 360.69 2903.43 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
63. ENSGALG00000018386 ENSGALG00000018386 358.36 2884.67
64. RPL6 ENSGALG00000004818 356.03 2865.92 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
65. RPS25 ENSGALG00000007699 331.60 2669.26 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
66. ENSGALG00000028992 ENSGALG00000028992 326.95 2631.83
67. RPS20 ENSGALG00000014432 326.36 2627.08 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
68. RPL23 ENSGALG00000001634 319.97 2575.65 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
69. TCEB3 ENSGALG00000034625 315.31 2538.13 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. TXN ENSGALG00000015704 314.73 2533.47 thioredoxin [Source:NCBI gene;Acc:396437]
71. RPLP2 ENSGALG00000034811 313.57 2524.13 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
72. RPS13 ENSGALG00000006096 313.57 2524.13 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
73. MT-ND3 MT-ND3 301.93 2430.43
74. EEF1D 301.35 2425.76 eukaryotic translation elongation factor 1 delta, transcript variant X13
75. CIRBP ENSGALG00000030918 293.20 2360.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
76. ENSGALG00000002696 ENSGALG00000002696 292.62 2355.49
77. ANP32B ENSGALG00000037483 291.46 2346.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
78. RPL37 ENSGALG00000014833 285.64 2299.30 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
79. MT-ND6 MT-ND6 285.06 2294.63
80. RAN ENSGALG00000002569 281.57 2266.54 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
81. HMGN5 ENSGALG00000007131 276.92 2229.11 high mobility group nucleosome binding domain 5, transcript variant X1
82. ENSGALG00000028649 ENSGALG00000028649 276.33 2224.36
83. STMN1 ENSGALG00000001475 275.17 2215.02 stathmin 1 [Source:NCBI gene;Acc:396057]
84. RPL7 ENSGALG00000035252 272.26 2191.60 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
85. HMGN2 HMGN2 269.93 2172.84
86. CRHOA CRHOA 269.35 2168.17
87. RPL10A ENSGALG00000002644 265.86 2140.08 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. UBB ENSGALG00000004509 252.48 2032.37 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. PRDX1 ENSGALG00000010243 247.25 1990.28 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
90. ENO1 ENSGALG00000002377 244.92 1971.52 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
91. ENSGALG00000022570 ENSGALG00000022570 241.43 1943.43
92. AKAP12 ENSGALG00000036240 238.52 1920.00 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
93. EIF5A2 ENSGALG00000009309 234.45 1887.24 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
94. MT-ND1 MT-ND1 229.21 1845.06
95. LDHB ENSGALG00000035836 221.65 1784.20 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
96. NUCKS1 ENSGALG00000000708 216.41 1742.02 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
97. RPL37A ENSGALG00000011472 216.41 1742.02 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
98. H3-IX H3-IX 213.50 1718.60
99. RPL31 ENSGALG00000016775 213.50 1718.60 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
100. RPS17 ENSGALG00000002157 209.43 1685.84 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA