Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s2.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3609.94 29055.75
2. RPL35A ENSGALG00000007611, ENSGALG00000041230 1177.29 9475.79 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
3. RPLP0 ENSGALG00000023294 1164.97 9376.63 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. RPLP1 ENSGALG00000030878 1111.56 8946.75 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPS10 ENSGALG00000002813 1085.74 8738.92 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. RPL4 ENSGALG00000007711 1028.81 8280.71 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
7. MT-ATP6 MT-ATP6 998.29 8035.06
8. RPS23 ENSGALG00000015617 916.72 7378.51 ribosomal protein S23
9. GAPDH ENSGALG00000014442 907.91 7307.60 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. EEF1A EEF1A 888.55 7151.78
11. RPS8 ENSGALG00000010124 868.00 6986.37 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
12. MT-ND5 MT-ND5 836.90 6736.06
13. RPS28 ENSGALG00000024398 815.19 6561.32 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
14. RPL27A ENSGALG00000005948 755.91 6084.18 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
15. RPS15 ENSGALG00000015195 726.57 5848.03 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
16. gga-mir-3533 ENSGALG00000027736 711.89 5729.87 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
17. RPL23A ENSGALG00000003966 681.96 5488.97 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. gga-mir-3527 gga-mir-3527 677.27 5451.22
19. RPL13 ENSGALG00000006179 670.81 5399.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
20. RPL7A ENSGALG00000003197 670.22 5394.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
21. RPL27 ENSGALG00000002837 642.05 5167.74 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
22. RPL19 ENSGALG00000001658 636.77 5125.25 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL8 ENSGALG00000016232 635.01 5111.08 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPS12 ENSGALG00000013990 633.25 5096.91 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
25. RPS4 RPS4 631.49 5082.75
26. RPL32 ENSGALG00000027142 628.56 5059.17 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. RPSA 620.93 4997.75 ribosomal protein SA
28. RPS21 ENSGALG00000005338 600.97 4837.10 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. RPL29 ENSGALG00000026978 598.62 4818.18 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. SNRPD1 ENSGALG00000041334 574.56 4624.53 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
31. RPL38 ENSGALG00000001465 572.21 4605.61 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
32. MT-CYB MT-CYB 562.82 4530.04
33. RPL26 RPL26 559.30 4501.70
34. RPS29 ENSGALG00000012229 557.54 4487.54 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
35. RPL15 ENSGALG00000011290 555.19 4468.62 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
36. RPS3A ENSGALG00000010077 540.52 4350.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
37. RPS15A ENSGALG00000006771 534.07 4298.63 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
38. RPS2 ENSGALG00000005490 533.48 4293.88 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
39. PPIA ENSGALG00000028600 532.31 4284.47 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
40. RPS11 ENSGALG00000017299 505.90 4071.90 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RPL24 ENSGALG00000015339 499.44 4019.90 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
42. RPS16 ENSGALG00000026490 481.25 3873.49 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPL12 ENSGALG00000008806 473.03 3807.33 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. RPL36 ENSGALG00000000474 457.77 3684.51 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
45. RPS6 ENSGALG00000015082 456.01 3670.34 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
46. TMSB4X ENSGALG00000026383 453.66 3651.43 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
47. RPL36AL ENSGALG00000004952 450.14 3623.10 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
48. RPL21 ENSGALG00000027035 444.27 3575.85 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPS7 ENSGALG00000016392 441.93 3557.01 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. ENO1 ENSGALG00000002377 437.82 3523.93 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
51. MT-CO1 MT-CO1 431.95 3476.69
52. RPL35 ENSGALG00000035677 430.77 3467.19 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
53. ANP32B ENSGALG00000037483 417.28 3358.61 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
54. RPL14 ENSGALG00000043379 416.10 3349.11 ribosomal protein L14
55. RPS14 ENSGALG00000004588 404.95 3259.37 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
56. TCEB3 ENSGALG00000034625 400.26 3221.62 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
57. ENSGALG00000018384 ENSGALG00000018384 397.32 3197.96
58. NME2 ENSGALG00000002932 387.93 3122.38 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
59. RPL18A 385.58 3103.46 ribosomal protein L18a
60. RPS27A ENSGALG00000036790 382.65 3079.88 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
61. MDK ENSGALG00000008367 376.78 3032.63 midkine [Source:NCBI gene;Acc:423196]
62. RPL6 ENSGALG00000004818 369.15 2971.22 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. MT-ND6 MT-ND6 364.46 2933.47
64. RPL5 ENSGALG00000005922 362.70 2919.31 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. HMGN2 HMGN2 359.17 2890.89
66. MT-ND4 MT-ND4 357.41 2876.73
67. ENSGALG00000028992 ENSGALG00000028992 348.61 2805.90
68. CIRBP ENSGALG00000030918 344.50 2772.82 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. RPS13 ENSGALG00000006096 340.39 2739.74 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. RPL23 ENSGALG00000001634 331.59 2668.91 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
71. ENSGALG00000028649 ENSGALG00000028649 329.83 2654.74
72. RPS20 ENSGALG00000014432 329.24 2649.99 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
73. ALDOC ENSGALG00000026077 323.37 2602.75 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
74. ENSGALG00000002696 ENSGALG00000002696 318.09 2560.25
75. LDHB ENSGALG00000035836 315.16 2536.67 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
76. ENSGALG00000018386 ENSGALG00000018386 312.81 2517.75
77. GNB2L1 ENSGALG00000000122 305.18 2456.34 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
78. MT-ND3 MT-ND3 300.49 2418.59
79. RPS25 ENSGALG00000007699 298.14 2399.67 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
80. RAN ENSGALG00000002569 296.38 2385.51 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
81. RPLP2 ENSGALG00000034811 295.79 2380.76 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
82. TXN ENSGALG00000015704 286.99 2309.93 thioredoxin [Source:NCBI gene;Acc:396437]
83. EIF5A2 ENSGALG00000009309 286.40 2305.18 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
84. STMN1 ENSGALG00000001475 285.23 2295.76 stathmin 1 [Source:NCBI gene;Acc:396057]
85. RPL37 ENSGALG00000014833 278.18 2239.02 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
86. RPL37A ENSGALG00000011472 277.01 2229.60 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
87. PRDX1 ENSGALG00000010243 271.14 2182.36 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. RPL31 ENSGALG00000016775 271.14 2182.36 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
89. UBB ENSGALG00000004509 268.21 2158.77 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. RPL10A ENSGALG00000002644 259.40 2087.86 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
91. RPL7 ENSGALG00000035252 254.12 2045.37 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. PKM ENSGALG00000001992 251.19 2021.78 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
93. MT-ND1 MT-ND1 237.10 1908.37
94. MIF ENSGALG00000006326 230.06 1851.71 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. EEF1D 221.26 1780.88 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. PHB2 ENSGALG00000014567 221.26 1780.88 prohibitin 2 [Source:NCBI gene;Acc:771124]
97. MARCKSL1 ENSGALG00000032335 217.73 1752.47 MARCKS like 1 [Source:NCBI gene;Acc:770764]
98. HSPA8 ENSGALG00000006512 216.56 1743.05 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
99. HMGN5 ENSGALG00000007131 214.80 1728.89 high mobility group nucleosome binding domain 5, transcript variant X1
100. DYL1 ENSGALG00000007153 211.87 1705.30 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA