Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s17.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2925.37 23546.65
2. MT-ATP6 MT-ATP6 1148.45 9244.01
3. RPLP1 ENSGALG00000030878 1142.68 9197.57 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. RPLP0 ENSGALG00000023294 1055.54 8496.17 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1012.83 8152.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPL4 ENSGALG00000007711 966.08 7776.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
7. gga-mir-3533 ENSGALG00000027736 926.84 7460.24 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. ENSGALG00000018384 ENSGALG00000018384 908.95 7316.25
9. RPS10 ENSGALG00000002813 901.45 7255.88 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. EEF1A EEF1A 898.56 7232.62
11. RPS8 ENSGALG00000010124 861.63 6935.36 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
12. RPS28 ENSGALG00000024398 841.43 6772.77 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
13. RPS23 ENSGALG00000015617 799.88 6438.33 ribosomal protein S23
14. GAPDH ENSGALG00000014442 712.15 5732.18 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. MT-ND5 MT-ND5 685.61 5518.56
16. RPS12 ENSGALG00000013990 678.68 5462.78 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. RPL27A ENSGALG00000005948 664.83 5351.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. ENSGALG00000018386 ENSGALG00000018386 654.44 5267.66
19. gga-mir-3527 gga-mir-3527 607.70 4891.45
20. RPSA 605.97 4877.52 ribosomal protein SA
21. RPL13 ENSGALG00000006179 594.42 4784.56 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
22. RPL23A ENSGALG00000003966 594.42 4784.56 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
23. RPL7A ENSGALG00000003197 574.22 4621.96 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPL32 ENSGALG00000027142 573.07 4612.71 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
25. RPL27 ENSGALG00000002837 567.30 4566.26 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
26. RPS2 ENSGALG00000005490 560.95 4515.15 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
27. RPL29 ENSGALG00000026978 547.68 4408.34 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
28. RPS15 ENSGALG00000015195 543.64 4375.82 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
29. MT-CYB MT-CYB 532.67 4287.52
30. RPS29 ENSGALG00000012229 530.94 4273.60 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPL8 ENSGALG00000016232 526.32 4236.41 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
32. RPL15 ENSGALG00000011290 525.17 4227.16 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
33. RPS15A ENSGALG00000006771 524.59 4222.49 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. TMSB4X ENSGALG00000026383 502.09 4041.38 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
35. MDK ENSGALG00000008367 501.51 4036.71 midkine [Source:NCBI gene;Acc:423196]
36. RPS21 ENSGALG00000005338 500.35 4027.38 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPL26 RPL26 478.42 3850.86
38. RPL21 ENSGALG00000027035 469.77 3781.23 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPS4 RPS4 467.46 3762.64
40. RPS6 ENSGALG00000015082 464.57 3739.38 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
41. RPL19 ENSGALG00000001658 460.53 3706.86 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
42. RPS11 ENSGALG00000017299 451.88 3637.24 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. PPIA ENSGALG00000028600 451.30 3632.57 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
44. RPS3A ENSGALG00000010077 444.95 3581.45 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
45. SNRPD1 ENSGALG00000041334 444.38 3576.87 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
46. MT-ND4 MT-ND4 440.34 3544.35
47. NME2 ENSGALG00000002932 433.41 3488.57 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
48. RPL12 ENSGALG00000008806 425.91 3428.20 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. RPL24 ENSGALG00000015339 420.71 3386.34 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
50. GNB2L1 ENSGALG00000000122 416.10 3349.24 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
51. RPL38 ENSGALG00000001465 414.94 3339.90 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. RPL35 ENSGALG00000035677 412.63 3321.31 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
53. RPL36AL ENSGALG00000004952 404.55 3256.27 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
54. RPS16 ENSGALG00000026490 403.98 3251.68 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPL5 ENSGALG00000005922 401.09 3228.42 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
56. MT-CO1 MT-CO1 382.05 3075.17
57. RPS27A ENSGALG00000036790 381.47 3070.50 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. RPL6 ENSGALG00000004818 379.16 3051.90 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
59. RPL14 ENSGALG00000043379 371.66 2991.54 ribosomal protein L14
60. AKAP12 ENSGALG00000036240 365.31 2940.42 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
61. ENSGALG00000002696 ENSGALG00000002696 354.92 2856.79
62. RPL18A 350.88 2824.27 ribosomal protein L18a
63. RPS7 ENSGALG00000016392 350.88 2824.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. RPS14 ENSGALG00000004588 346.27 2787.17 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPL36 ENSGALG00000000474 338.76 2726.72 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
66. ANP32B ENSGALG00000037483 329.53 2652.43 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. RPS25 ENSGALG00000007699 322.03 2592.06 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. CIRBP ENSGALG00000030918 318.56 2564.13 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
69. TCEB3 ENSGALG00000034625 316.83 2550.20 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. HMGN5 ENSGALG00000007131 308.18 2480.58 high mobility group nucleosome binding domain 5, transcript variant X1
71. RPLP2 ENSGALG00000034811 301.83 2429.47 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
72. MT-ND6 MT-ND6 298.37 2401.62
73. RPS20 ENSGALG00000014432 298.37 2401.62 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
74. RPL7 ENSGALG00000035252 288.56 2322.65 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
75. TXN ENSGALG00000015704 281.05 2262.20 thioredoxin [Source:NCBI gene;Acc:396437]
76. RPS13 ENSGALG00000006096 280.48 2257.62 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
77. ENSGALG00000028649 ENSGALG00000028649 278.74 2243.61
78. ENSGALG00000028992 ENSGALG00000028992 278.17 2239.02
79. MT-ND3 MT-ND3 275.28 2215.76
80. RAN ENSGALG00000002569 274.13 2206.50 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
81. RPL23 ENSGALG00000001634 262.01 2108.95 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
82. CRHOA CRHOA 258.55 2081.10
83. HMGN2 HMGN2 258.55 2081.10
84. EIF5A2 ENSGALG00000009309 257.39 2071.76 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
85. ENO1 ENSGALG00000002377 252.20 2029.99 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
86. RPL31 ENSGALG00000016775 241.23 1941.69 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. NUCKS1 ENSGALG00000000708 240.08 1932.43 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
88. EEF1D 233.15 1876.65 eukaryotic translation elongation factor 1 delta, transcript variant X13
89. STMN1 ENSGALG00000001475 229.11 1844.13 stathmin 1 [Source:NCBI gene;Acc:396057]
90. RPL10A ENSGALG00000002644 225.07 1811.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
91. RPL37 ENSGALG00000014833 222.76 1793.02 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
92. SET ENSGALG00000004701 215.26 1732.65 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
93. ALDOC ENSGALG00000026077 208.91 1681.54 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
94. RPL37A ENSGALG00000011472 208.34 1676.95 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
95. LDHB ENSGALG00000035836 207.76 1672.28 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
96. MT-ND1 MT-ND1 206.61 1663.03
97. HMGB2 ENSGALG00000010745 206.03 1658.36 high mobility group box 2 [Source:NCBI gene;Acc:396482]
98. RPS17 ENSGALG00000002157 204.87 1649.02 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
99. UBB ENSGALG00000004509 200.83 1616.50 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
100. PRDX1 ENSGALG00000010243 196.22 1579.40 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA