Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s16.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3492.77 28113.73
2. EEF1A EEF1A 1225.98 9868.06
3. RPLP0 ENSGALG00000023294 1161.91 9352.35 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. RPS10 ENSGALG00000002813 1150.97 9264.30 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
5. RPL35A ENSGALG00000007611, ENSGALG00000041230 1140.03 9176.24 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
6. RPLP1 ENSGALG00000030878 1064.24 8566.20 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. ENSGALG00000018384 ENSGALG00000018384 951.72 7660.51
8. RPS23 ENSGALG00000015617 938.44 7553.62 ribosomal protein S23
9. MT-ATP6 MT-ATP6 879.83 7081.86
10. RPS28 ENSGALG00000024398 820.45 6603.90 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
11. gga-mir-3533 ENSGALG00000027736 794.66 6396.31 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPL4 ENSGALG00000007711 789.97 6358.56 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
13. RPS8 ENSGALG00000010124 788.41 6346.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. RPL7A ENSGALG00000003197 786.85 6333.45 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
15. GAPDH ENSGALG00000014442 754.81 6075.56 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPS12 ENSGALG00000013990 743.87 5987.50 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. RPL27A ENSGALG00000005948 732.93 5899.44 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
18. RPL27 ENSGALG00000002837 732.15 5893.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
19. RPS21 ENSGALG00000005338 730.59 5880.61 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
20. RPL29 ENSGALG00000026978 708.71 5704.49 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
21. RPL23A ENSGALG00000003966 682.14 5490.63 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
22. RPL8 ENSGALG00000016232 675.11 5434.04 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPS11 ENSGALG00000017299 668.08 5377.46 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
24. RPSA 653.23 5257.93 ribosomal protein SA
25. RPL32 ENSGALG00000027142 645.42 5195.06 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
26. MT-ND5 MT-ND5 635.26 5113.28
27. RPL26 RPL26 617.29 4968.64
28. RPS15 ENSGALG00000015195 609.48 4905.78 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
29. MDK ENSGALG00000008367 608.69 4899.42 midkine [Source:NCBI gene;Acc:423196]
30. RPS6 ENSGALG00000015082 601.66 4842.83 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
31. RPL38 ENSGALG00000001465 589.94 4748.50 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
32. gga-mir-3527 gga-mir-3527 564.94 4547.27
33. RPS29 ENSGALG00000012229 560.25 4509.52 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
34. RPL19 ENSGALG00000001658 554.00 4459.21 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
35. RPL14 ENSGALG00000043379 519.62 4182.48 ribosomal protein L14
36. MT-CYB MT-CYB 518.05 4169.85
37. TMSB4X ENSGALG00000026383 512.59 4125.90 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
38. RPL24 ENSGALG00000015339 505.55 4069.23 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
39. RPS16 ENSGALG00000026490 503.99 4056.68 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. RPS4 RPS4 502.43 4044.12
41. RPS2 ENSGALG00000005490 499.30 4018.93 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
42. RPL13 ENSGALG00000006179 492.27 3962.34 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
43. PPIA ENSGALG00000028600 486.80 3918.31 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
44. RPL15 ENSGALG00000011290 486.80 3918.31 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
45. RPS3A ENSGALG00000010077 478.20 3849.09 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
46. RPS7 ENSGALG00000016392 472.73 3805.06 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
47. RPL12 ENSGALG00000008806 471.17 3792.50 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
48. RPS27A ENSGALG00000036790 467.26 3761.03 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPS15A ENSGALG00000006771 462.58 3723.36 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. RPL35 ENSGALG00000035677 454.76 3660.42 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
51. MT-CO1 MT-CO1 435.23 3503.22
52. RPL21 ENSGALG00000027035 429.76 3459.19 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. RPL36 ENSGALG00000000474 428.98 3452.91 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
54. RPL36AL ENSGALG00000004952 428.98 3452.91 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
55. SNRPD1 ENSGALG00000041334 428.98 3452.91 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
56. RPL5 ENSGALG00000005922 407.88 3283.08 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
57. NME2 ENSGALG00000002932 407.10 3276.80 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPS14 ENSGALG00000004588 403.97 3251.60 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. ENSGALG00000018386 ENSGALG00000018386 400.07 3220.21
60. MT-ND6 MT-ND6 397.72 3201.30
61. TCEB3 ENSGALG00000034625 397.72 3201.30 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
62. GNB2L1 ENSGALG00000000122 381.31 3069.21 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
63. MT-ND4 MT-ND4 368.03 2962.32
64. RPL18A 366.47 2949.76 ribosomal protein L18a
65. RPL23 ENSGALG00000001634 366.47 2949.76 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. RPS20 ENSGALG00000014432 364.12 2930.85 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
67. ENSGALG00000028992 ENSGALG00000028992 359.43 2893.10
68. RPL6 ENSGALG00000004818 358.65 2886.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. ENSGALG00000002696 ENSGALG00000002696 351.62 2830.23
70. TXN ENSGALG00000015704 345.37 2779.92 thioredoxin [Source:NCBI gene;Acc:396437]
71. RPS25 ENSGALG00000007699 343.03 2761.09 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
72. MT-ND3 MT-ND3 335.21 2698.15
73. RPLP2 ENSGALG00000034811 316.46 2547.22 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
74. ENO1 ENSGALG00000002377 302.39 2433.97 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
75. RPL10A ENSGALG00000002644 300.05 2415.14 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
76. STMN1 ENSGALG00000001475 296.92 2389.94 stathmin 1 [Source:NCBI gene;Acc:396057]
77. RAN ENSGALG00000002569 295.36 2377.39 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
78. RPS13 ENSGALG00000006096 295.36 2377.39 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
79. CIRBP ENSGALG00000030918 289.89 2333.36 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
80. ANP32B ENSGALG00000037483 278.17 2239.02 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. RPL7 ENSGALG00000035252 277.39 2232.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. UBB ENSGALG00000004509 276.61 2226.47 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. RPL37 ENSGALG00000014833 273.48 2201.27 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
84. EEF1D 269.58 2169.88 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. ENSGALG00000028649 ENSGALG00000028649 263.32 2119.49
86. HMGN5 ENSGALG00000007131 253.17 2037.80 high mobility group nucleosome binding domain 5, transcript variant X1
87. EIF5A2 ENSGALG00000009309 249.26 2006.32 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
88. PRDX1 ENSGALG00000010243 249.26 2006.32 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
89. RPL37A ENSGALG00000011472 246.13 1981.13 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
90. RPL31 ENSGALG00000016775 245.35 1974.85 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
91. CRHOA CRHOA 244.57 1968.57
92. RPS17 ENSGALG00000002157 235.98 1899.43 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
93. LDHB ENSGALG00000035836 226.60 1823.93 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
94. RPL3 ENSGALG00000012172 221.91 1786.18 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
95. H3-IX H3-IX 221.13 1779.90
96. ATP5G3 220.35 1773.62 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
97. MT-ND1 MT-ND1 218.79 1761.07
98. ALDOC ENSGALG00000026077 208.63 1679.29 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
99. EEF1B2 ENSGALG00000008590 207.07 1666.73 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
100. HMGN2 HMGN2 206.28 1660.37
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA