Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s14.

Sample reads: 124,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2859.67 23017.03
2. RPLP0 ENSGALG00000023294 1288.10 10367.71 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPLP1 ENSGALG00000030878 1193.61 9607.18 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 1006.14 8098.26 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 981.19 7897.44 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. ENSGALG00000018384 ENSGALG00000018384 975.14 7848.75
7. RPS28 ENSGALG00000024398 950.20 7648.01 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
8. RPL4 ENSGALG00000007711 916.94 7380.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. EEF1A EEF1A 876.12 7051.75
10. MT-ATP6 MT-ATP6 867.05 6978.75
11. gga-mir-3533 ENSGALG00000027736 836.81 6735.35 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. RPS8 ENSGALG00000010124 802.04 6455.49 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPS23 ENSGALG00000015617 794.48 6394.64 ribosomal protein S23
14. MT-ND5 MT-ND5 792.97 6382.49
15. GAPDH ENSGALG00000014442 755.93 6084.36 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPL27A ENSGALG00000005948 712.84 5737.54 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
17. RPL23A ENSGALG00000003966 673.53 5421.14 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. RPL8 ENSGALG00000016232 628.93 5062.16 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPS29 ENSGALG00000012229 628.17 5056.04 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
20. RPS12 ENSGALG00000013990 624.39 5025.62 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
21. RPL29 ENSGALG00000026978 619.10 4983.04 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
22. RPL38 ENSGALG00000001465 602.47 4849.18 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
23. RPL27 ENSGALG00000002837 591.89 4764.03 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPL7A ENSGALG00000003197 590.38 4751.87 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. PPIA ENSGALG00000028600 588.11 4733.60 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
26. RPS21 ENSGALG00000005338 585.09 4709.30 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
27. RPS2 ENSGALG00000005490 569.21 4581.48 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
28. RPL19 ENSGALG00000001658 560.90 4514.59 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
29. gga-mir-3527 gga-mir-3527 556.36 4478.05
30. RPL13 ENSGALG00000006179 548.05 4411.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
31. RPSA 547.29 4405.05 ribosomal protein SA
32. RPS11 ENSGALG00000017299 546.53 4398.93 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPL15 ENSGALG00000011290 540.49 4350.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
34. RPS15 ENSGALG00000015195 530.66 4271.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
35. RPL26 RPL26 529.90 4265.08
36. RPL32 ENSGALG00000027142 520.08 4186.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPS4 RPS4 520.08 4186.04
38. RPS6 ENSGALG00000015082 500.42 4027.80 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. MT-CYB MT-CYB 494.38 3979.19
40. RPS3A ENSGALG00000010077 481.52 3875.68 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
41. RPL36 ENSGALG00000000474 479.26 3857.49 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
42. RPL12 ENSGALG00000008806 476.23 3833.10 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPL21 ENSGALG00000027035 468.67 3772.25 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
44. RPL35 ENSGALG00000035677 464.14 3735.79 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
45. RPS15A ENSGALG00000006771 452.04 3638.40 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
46. RPL14 ENSGALG00000043379 450.53 3626.24 ribosomal protein L14
47. MT-ND6 MT-ND6 449.78 3620.21
48. RPS16 ENSGALG00000026490 449.02 3614.09 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. MDK ENSGALG00000008367 446.00 3589.78 midkine [Source:NCBI gene;Acc:423196]
50. SNRPD1 ENSGALG00000041334 446.00 3589.78 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
51. TMSB4X ENSGALG00000026383 439.19 3534.97 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
52. RPL24 ENSGALG00000015339 425.59 3425.51 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
53. RPS7 ENSGALG00000016392 424.07 3413.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
54. RPS20 ENSGALG00000014432 402.15 3236.84 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
55. RPS27A ENSGALG00000036790 400.64 3224.69 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
56. RPL36AL ENSGALG00000004952 383.25 3084.72 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
57. NME2 ENSGALG00000002932 379.47 3054.29 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL18A 371.16 2987.41 ribosomal protein L18a
59. RPS14 ENSGALG00000004588 371.16 2987.41 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
60. ENSGALG00000028992 ENSGALG00000028992 358.31 2883.98
61. TCEB3 ENSGALG00000034625 354.53 2853.56 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
62. ENSGALG00000002696 ENSGALG00000002696 349.24 2810.98
63. MT-CO1 MT-CO1 340.17 2737.97
64. RPL6 ENSGALG00000004818 339.41 2731.86 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
65. MT-ND4 MT-ND4 335.63 2701.43
66. RPLP2 ENSGALG00000034811 323.54 2604.12 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
67. RPL23 ENSGALG00000001634 320.51 2579.73 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
68. ANP32B ENSGALG00000037483 315.98 2543.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
69. RPS13 ENSGALG00000006096 315.22 2537.16 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
70. TXN ENSGALG00000015704 309.17 2488.46 thioredoxin [Source:NCBI gene;Acc:396437]
71. RPL5 ENSGALG00000005922 306.15 2464.15 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
72. CIRBP ENSGALG00000030918 305.39 2458.04 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
73. RPL37 ENSGALG00000014833 301.61 2427.61 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
74. RPS25 ENSGALG00000007699 300.10 2415.46 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. ENSGALG00000028649 ENSGALG00000028649 293.30 2360.72
76. GNB2L1 ENSGALG00000000122 289.52 2330.30 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
77. HMGN5 ENSGALG00000007131 289.52 2330.30 high mobility group nucleosome binding domain 5, transcript variant X1
78. ENSGALG00000018386 ENSGALG00000018386 286.50 2305.99
79. RPL37A ENSGALG00000011472 284.98 2293.76 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
80. ENO1 ENSGALG00000002377 278.94 2245.14 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
81. MT-ND3 MT-ND3 277.42 2232.91
82. RAN ENSGALG00000002569 266.84 2147.75 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
83. HMGN2 HMGN2 250.97 2020.02
84. RPL10A ENSGALG00000002644 245.68 1977.44 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. AKAP12 ENSGALG00000036240 242.65 1953.05 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
86. RPL31 ENSGALG00000016775 242.65 1953.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. EIF5A2 ENSGALG00000009309 235.85 1898.32 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
88. PHB2 ENSGALG00000014567 226.78 1825.32 prohibitin 2 [Source:NCBI gene;Acc:771124]
89. EEF1D 224.51 1807.05 eukaryotic translation elongation factor 1 delta, transcript variant X13
90. RPL7 ENSGALG00000035252 223.75 1800.93 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
91. NUCKS1 ENSGALG00000000708 223.00 1794.89 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
92. PRDX1 ENSGALG00000010243 220.73 1776.62 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. UBB ENSGALG00000004509 220.73 1776.62 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
94. ATP5G3 219.97 1770.50 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
95. LDHB ENSGALG00000035836 216.19 1740.08 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
96. CRHOA CRHOA 215.44 1734.04
97. MT-ND1 MT-ND1 207.88 1673.19
98. STMN1 ENSGALG00000001475 207.12 1667.08 stathmin 1 [Source:NCBI gene;Acc:396057]
99. RPS17 ENSGALG00000002157 205.61 1654.92 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
100. HSP90AB1 ENSGALG00000010175 204.10 1642.77 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA