Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s13.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2981.30 23997.49
2. MT-ATP6 MT-ATP6 1386.13 11157.43
3. RPLP0 ENSGALG00000023294 1238.90 9972.33 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. MT-ND5 MT-ND5 1095.25 8816.04
5. RPLP1 ENSGALG00000030878 1089.53 8770.00 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. gga-mir-3533 ENSGALG00000027736 1022.35 8229.24 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 965.54 7771.96 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. EEF1A EEF1A 962.32 7746.04
9. RPL4 ENSGALG00000007711 935.88 7533.21 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
10. ENSGALG00000018384 ENSGALG00000018384 886.21 7133.40
11. RPS10 ENSGALG00000002813 857.26 6900.38 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. RPS23 ENSGALG00000015617 848.69 6831.39 ribosomal protein S23
13. RPS28 ENSGALG00000024398 825.82 6647.30 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
14. RPS8 ENSGALG00000010124 803.66 6468.93 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. GAPDH ENSGALG00000014442 721.47 5807.36 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. gga-mir-3527 gga-mir-3527 718.26 5781.52
17. MT-CYB MT-CYB 680.02 5473.71
18. RPL23A ENSGALG00000003966 631.42 5082.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
19. RPL27 ENSGALG00000002837 604.98 4869.69 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
20. RPL27A ENSGALG00000005948 599.98 4829.44 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPL32 ENSGALG00000027142 583.90 4700.01 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
22. RPS12 ENSGALG00000013990 582.47 4688.50 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
23. RPS15 ENSGALG00000015195 580.68 4674.09 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPL8 ENSGALG00000016232 574.61 4625.23 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
25. RPS2 ENSGALG00000005490 552.81 4449.75 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
26. RPL13 ENSGALG00000006179 538.87 4337.55 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
27. RPL7A ENSGALG00000003197 535.66 4311.71 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPS29 ENSGALG00000012229 522.43 4205.22 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. MDK ENSGALG00000008367 515.64 4150.56 midkine [Source:NCBI gene;Acc:423196]
30. RPSA 506.71 4078.68 ribosomal protein SA
31. RPS11 ENSGALG00000017299 501.35 4035.54 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
32. MT-ND4 MT-ND4 489.92 3943.53
33. RPL26 RPL26 488.13 3929.12
34. RPS21 ENSGALG00000005338 487.06 3920.51 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
35. RPL29 ENSGALG00000026978 486.34 3914.72 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
36. RPS4 RPS4 477.77 3845.73
37. MT-ND6 MT-ND6 473.12 3808.30
38. RPS6 ENSGALG00000015082 470.26 3785.28 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. SNRPD1 ENSGALG00000041334 465.97 3750.75 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
40. RPL15 ENSGALG00000011290 462.76 3724.91 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
41. RPL19 ENSGALG00000001658 459.90 3701.89 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
42. PPIA ENSGALG00000028600 458.11 3687.48 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
43. RPS3A ENSGALG00000010077 453.47 3650.13 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
44. RPL21 ENSGALG00000027035 442.39 3560.95 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. RPL38 ENSGALG00000001465 439.53 3537.93 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
46. RPS15A ENSGALG00000006771 433.10 3486.17 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. RPL35 ENSGALG00000035677 426.67 3434.41 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
48. RPL14 ENSGALG00000043379 423.81 3411.39 ribosomal protein L14
49. RPS16 ENSGALG00000026490 423.45 3408.49 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. TMSB4X ENSGALG00000026383 419.88 3379.76 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
51. RPL36AL ENSGALG00000004952 419.52 3376.86 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
52. MT-CO1 MT-CO1 416.30 3350.94
53. RPL12 ENSGALG00000008806 414.16 3333.71 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
54. GNB2L1 ENSGALG00000000122 411.66 3313.59 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
55. RPL24 ENSGALG00000015339 407.73 3281.96 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
56. RPL36 ENSGALG00000000474 397.72 3201.38 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. RPS27A ENSGALG00000036790 384.14 3092.07 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. RPL18A 378.42 3046.03 ribosomal protein L18a
59. NME2 ENSGALG00000002932 361.99 2913.78 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
60. RPS14 ENSGALG00000004588 353.41 2844.72 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPL5 ENSGALG00000005922 350.55 2821.70 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
62. RPL6 ENSGALG00000004818 340.90 2744.02 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPS7 ENSGALG00000016392 338.40 2723.90 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. RPS20 ENSGALG00000014432 334.47 2692.26 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
65. ANP32B ENSGALG00000037483 324.47 2611.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
66. RPS25 ENSGALG00000007699 321.25 2585.85 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
67. MT-ND1 MT-ND1 320.18 2577.24
68. RPS13 ENSGALG00000006096 315.53 2539.81 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. TXN ENSGALG00000015704 313.75 2525.48 thioredoxin [Source:NCBI gene;Acc:396437]
70. ENSGALG00000028992 ENSGALG00000028992 306.60 2467.93
71. MT-ND3 MT-ND3 304.10 2447.80
72. RPLP2 ENSGALG00000034811 304.10 2447.80 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
73. RPL37 ENSGALG00000014833 298.38 2401.76 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
74. ALDOC ENSGALG00000026077 298.02 2398.86 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
75. ENSGALG00000028649 ENSGALG00000028649 295.88 2381.64
76. EIF5A2 ENSGALG00000009309 293.38 2361.51 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. TCEB3 ENSGALG00000034625 285.87 2301.06 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
78. CIRBP ENSGALG00000030918 284.09 2286.74 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
79. RPL23 ENSGALG00000001634 281.23 2263.72 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
80. ENSGALG00000002696 ENSGALG00000002696 277.65 2234.90
81. ENO1 ENSGALG00000002377 275.15 2214.78 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
82. RAN ENSGALG00000002569 273.37 2200.45 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
83. RPL37A ENSGALG00000011472 268.01 2157.30 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
84. HMGN2 HMGN2 256.93 2068.12
85. RPL7 ENSGALG00000035252 242.64 1953.09 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
86. RPL10A ENSGALG00000002644 239.42 1927.17 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. PRDX1 ENSGALG00000010243 237.99 1915.66 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. ENSGALG00000018386 ENSGALG00000018386 236.20 1901.25
89. UBB ENSGALG00000004509 234.42 1886.93 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
90. AKAP12 ENSGALG00000036240 232.99 1875.42 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
91. CRHOA CRHOA 229.41 1846.60
92. LDHB ENSGALG00000035836 226.20 1820.76 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. STMN1 ENSGALG00000001475 224.77 1809.25 stathmin 1 [Source:NCBI gene;Acc:396057]
94. HMGN5 ENSGALG00000007131 220.84 1777.62 high mobility group nucleosome binding domain 5, transcript variant X1
95. EEF1D 217.98 1754.59 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. SET ENSGALG00000004701 217.98 1754.59 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
97. RPL31 ENSGALG00000016775 215.83 1737.29 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. NUCKS1 ENSGALG00000000708 208.33 1676.92 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
99. ATP5G3 205.11 1651.00 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. DYL1 ENSGALG00000007153 203.33 1636.67 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA