Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s10.

Sample reads: 124,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2657.68 21391.44
2. RPLP0 ENSGALG00000023294 1384.60 11144.53 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. MT-ATP6 MT-ATP6 1150.22 9258.02
4. EEF1A EEF1A 1047.48 8431.08
5. RPLP1 ENSGALG00000030878 1035.61 8335.54 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPL35A ENSGALG00000007611, ENSGALG00000041230 1015.47 8173.43 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
7. gga-mir-3533 ENSGALG00000027736 1008.76 8119.42 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. RPL4 ENSGALG00000007711 961.27 7737.18 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
9. RPS10 ENSGALG00000002813 943.20 7591.74 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS28 ENSGALG00000024398 934.42 7521.07 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
11. RPS23 ENSGALG00000015617 858.02 6906.13 ribosomal protein S23
12. MT-ND5 MT-ND5 816.20 6569.52
13. RPS8 ENSGALG00000010124 769.22 6191.39 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. GAPDH ENSGALG00000014442 726.37 5846.49 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
15. RPL27A ENSGALG00000005948 684.55 5509.88 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
16. RPS15 ENSGALG00000015195 668.55 5381.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
17. RPL23A ENSGALG00000003966 657.71 5293.85 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
18. gga-mir-3527 gga-mir-3527 640.16 5152.59
19. RPS12 ENSGALG00000013990 627.25 5048.68 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
20. RPL13 ENSGALG00000006179 625.70 5036.21 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
21. RPL27 ENSGALG00000002837 614.86 4948.96 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
22. PPIA ENSGALG00000028600 610.21 4911.53 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
23. RPS29 ENSGALG00000012229 590.60 4753.69 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
24. RPSA 585.43 4712.08 ribosomal protein SA
25. RPL38 ENSGALG00000001465 582.85 4691.31 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
26. RPL15 ENSGALG00000011290 564.78 4545.87 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPS4 RPS4 556.52 4479.38
28. RPS2 ENSGALG00000005490 556.01 4475.28 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
29. RPL8 ENSGALG00000016232 544.65 4383.84 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
30. RPL7A ENSGALG00000003197 543.10 4371.37 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. RPL19 ENSGALG00000001658 542.07 4363.07 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPS11 ENSGALG00000017299 541.55 4358.89 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPL29 ENSGALG00000026978 537.94 4329.83 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. RPL26 RPL26 522.97 4209.34
35. SNRPD1 ENSGALG00000041334 512.13 4122.09 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
36. RPS21 ENSGALG00000005338 505.41 4068.00 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPL32 ENSGALG00000027142 498.70 4013.99 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. MT-CYB MT-CYB 497.15 4001.52
39. RPS15A ENSGALG00000006771 493.54 3972.46 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
40. TMSB4X ENSGALG00000026383 480.12 3864.44 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
41. RPL36 ENSGALG00000000474 477.02 3839.49 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
42. RPS16 ENSGALG00000026490 464.63 3739.77 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPS3A ENSGALG00000010077 448.11 3606.80 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
44. RPL35 ENSGALG00000035677 446.56 3594.32 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
45. RPL24 ENSGALG00000015339 445.01 3581.85 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
46. RPL12 ENSGALG00000008806 437.27 3519.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. MT-ND4 MT-ND4 429.52 3457.17
48. RPL21 ENSGALG00000027035 424.88 3419.82 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. MT-CO1 MT-CO1 416.62 3353.34
50. RPS6 ENSGALG00000015082 404.74 3257.72 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
51. RPS27A ENSGALG00000036790 395.45 3182.94 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. MT-ND6 MT-ND6 390.81 3145.60
53. RPL14 ENSGALG00000043379 390.81 3145.60 ribosomal protein L14
54. RPL36AL ENSGALG00000004952 385.64 3103.98 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
55. ANP32B ENSGALG00000037483 384.61 3095.69 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. RPS7 ENSGALG00000016392 375.83 3025.02 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. NME2 ENSGALG00000002932 374.28 3012.55 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL18A 367.06 2954.43 ribosomal protein L18a
59. ENO1 ENSGALG00000002377 348.99 2808.99 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
60. GNB2L1 ENSGALG00000000122 345.89 2784.04 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
61. RPS13 ENSGALG00000006096 341.76 2750.80 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
62. RPS14 ENSGALG00000004588 336.60 2709.26 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. RPL6 ENSGALG00000004818 336.08 2705.08 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
64. TCEB3 ENSGALG00000034625 335.57 2700.97 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
65. RPL37A ENSGALG00000011472 328.34 2642.78 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
66. TXN ENSGALG00000015704 326.79 2630.30 thioredoxin [Source:NCBI gene;Acc:396437]
67. HMGN2 HMGN2 325.24 2617.83
68. RPLP2 ENSGALG00000034811 318.53 2563.82 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
69. CIRBP ENSGALG00000030918 316.46 2547.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
70. RPS20 ENSGALG00000014432 315.43 2538.87 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
71. RPL5 ENSGALG00000005922 314.92 2534.76 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
72. RPL23 ENSGALG00000001634 312.33 2513.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. ENSGALG00000028992 ENSGALG00000028992 309.75 2493.15
74. MT-ND3 MT-ND3 304.59 2451.62
75. RPL37 ENSGALG00000014833 301.49 2426.67 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
76. EIF5A2 ENSGALG00000009309 300.46 2418.38 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
77. ALDOC ENSGALG00000026077 299.43 2410.09 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
78. MDK ENSGALG00000008367 296.85 2389.32 midkine [Source:NCBI gene;Acc:423196]
79. RAN ENSGALG00000002569 283.42 2281.22 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
80. ENSGALG00000028649 ENSGALG00000028649 278.26 2239.69
81. MT-ND1 MT-ND1 276.20 2223.11
82. STMN1 ENSGALG00000001475 267.42 2152.44 stathmin 1 [Source:NCBI gene;Acc:396057]
83. PRDX1 ENSGALG00000010243 264.84 2131.67 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
84. PKM ENSGALG00000001992 262.26 2110.91 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
85. UBB ENSGALG00000004509 250.90 2019.47 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
86. ENSGALG00000002696 ENSGALG00000002696 248.83 2002.81
87. LDHB ENSGALG00000035836 248.32 1998.71 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
88. RPL7 ENSGALG00000035252 248.32 1998.71 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
89. RPS25 ENSGALG00000007699 248.32 1998.71 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
90. ENSGALG00000018384 ENSGALG00000018384 247.80 1994.52
91. MARCKSL1 ENSGALG00000032335 234.38 1886.50 MARCKS like 1 [Source:NCBI gene;Acc:770764]
92. HSPA8 ENSGALG00000006512 229.22 1844.97 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
93. HMGN5 ENSGALG00000007131 227.15 1828.31 high mobility group nucleosome binding domain 5, transcript variant X1
94. RPL31 ENSGALG00000016775 226.12 1820.02 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. CRHOA CRHOA 220.96 1778.49
96. RPL10A ENSGALG00000002644 210.12 1691.24 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
97. SLC25A6_1 ENSGALG00000016691 206.50 1662.10 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. DYL1 ENSGALG00000007153 202.89 1633.04 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
99. PHB2 ENSGALG00000014567 201.34 1620.57 prohibitin 2 [Source:NCBI gene;Acc:771124]
100. H2AFZ ENSGALG00000014023 198.24 1595.62 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA