Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s9.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4907.29 39502.47
2. MT-ATP6 MT-ATP6 1996.82 16073.91
3. EEF1A EEF1A 1397.19 11247.03
4. TMSB4X ENSGALG00000026383 893.92 7195.83 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
5. MT-ND5 MT-ND5 871.29 7013.67
6. RPS3A ENSGALG00000010077 820.78 6607.08 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
7. gga-mir-3533 ENSGALG00000027736 798.73 6429.58 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-CYB MT-CYB 769.12 6191.23
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 703.53 5663.24 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. RPS10 ENSGALG00000002813 689.60 5551.11 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPLP1 ENSGALG00000030878 688.44 5541.77 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. MT-CO1 MT-CO1 666.96 5368.86
13. MT-ND4 MT-ND4 655.35 5275.40
14. RPS23 ENSGALG00000015617 652.45 5252.06 ribosomal protein S23
15. RPLP0 ENSGALG00000023294 632.13 5088.49 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. GAPDH ENSGALG00000014442 585.69 4714.66 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. RPL4 ENSGALG00000007711 577.57 4649.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. RPL8 ENSGALG00000016232 568.86 4579.18 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. ENSGALG00000018384 ENSGALG00000018384 542.16 4364.25
20. RPS8 ENSGALG00000010124 535.77 4312.82 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RAN ENSGALG00000002569 461.47 3714.72 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
22. HMGB2 ENSGALG00000010745 427.81 3443.76 high mobility group box 2 [Source:NCBI gene;Acc:396482]
23. RPS4 RPS4 425.48 3425.01
24. TXN ENSGALG00000015704 423.16 3406.33 thioredoxin [Source:NCBI gene;Acc:396437]
25. RPL7A ENSGALG00000003197 420.84 3387.66 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
26. STMN1 ENSGALG00000001475 387.75 3121.29 stathmin 1 [Source:NCBI gene;Acc:396057]
27. PHB2 ENSGALG00000014567 377.31 3037.25 prohibitin 2 [Source:NCBI gene;Acc:771124]
28. RPS6 ENSGALG00000015082 377.31 3037.25 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
29. SNRPD1 ENSGALG00000041334 374.40 3013.83 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
30. RPL15 ENSGALG00000011290 371.50 2990.48 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. RPL23A ENSGALG00000003966 364.54 2934.46 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
32. gga-mir-3527 gga-mir-3527 364.54 2934.46
33. RPL27A ENSGALG00000005948 359.89 2897.03 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPL32 ENSGALG00000027142 357.57 2878.35 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
35. RPL26 RPL26 356.41 2869.01
36. RPS28 ENSGALG00000024398 354.67 2855.01 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
37. RPS12 ENSGALG00000013990 349.44 2812.91 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
38. RPL27 ENSGALG00000002837 346.54 2789.56 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
39. RPLP2 ENSGALG00000034811 336.67 2710.11 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
40. CIRBP ENSGALG00000030918 334.93 2696.10 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
41. ENSGALG00000002696 ENSGALG00000002696 326.22 2625.99
42. RPL19 ENSGALG00000001658 318.10 2560.63 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
43. RPSA 316.94 2551.29 ribosomal protein SA
44. MARCKSL1 ENSGALG00000032335 315.20 2537.28 MARCKS like 1 [Source:NCBI gene;Acc:770764]
45. RPS2 ENSGALG00000005490 312.29 2513.86 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
46. UBB ENSGALG00000004509 309.97 2495.18 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
47. RPL29 ENSGALG00000026978 304.17 2448.49 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
48. HBZ ENSGALG00000023740 298.36 2401.72 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
49. HMGN2 HMGN2 297.20 2392.39
50. RPL18A 290.82 2341.03 ribosomal protein L18a
51. RPL13 ENSGALG00000006179 289.65 2331.61 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
52. RPS15 ENSGALG00000015195 289.07 2326.94 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
53. ENSGALG00000018386 ENSGALG00000018386 288.49 2322.27
54. MT-ND1 MT-ND1 286.17 2303.60
55. ANP32B ENSGALG00000037483 285.59 2298.93 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
56. RPL21 ENSGALG00000027035 285.01 2294.26 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
57. PPIA ENSGALG00000028600 284.43 2289.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
58. RPS21 ENSGALG00000005338 280.95 2261.58 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
59. RPL6 ENSGALG00000004818 280.37 2256.91 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
60. PSMC6 ENSGALG00000012408 279.79 2252.24 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
61. RPL5 ENSGALG00000005922 278.05 2238.23 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
62. RPL14 ENSGALG00000043379 274.56 2210.14 ribosomal protein L14
63. RPS13 ENSGALG00000006096 274.56 2210.14 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
64. RPS14 ENSGALG00000004588 271.08 2182.13 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. RPS15A ENSGALG00000006771 269.92 2172.79 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
66. RPL36AL ENSGALG00000004952 266.44 2144.78 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
67. RPL12 ENSGALG00000008806 262.37 2112.01 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
68. RPL37 ENSGALG00000014833 262.37 2112.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
69. RPS16 ENSGALG00000026490 260.63 2098.01 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
70. HSPA8 ENSGALG00000006512 255.41 2055.99 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
71. ENO1 ENSGALG00000002377 254.83 2051.32 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. RPS29 ENSGALG00000012229 253.67 2041.98 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
73. MT-ND3 MT-ND3 253.08 2037.23
74. HMGN5 ENSGALG00000007131 244.96 1971.87 high mobility group nucleosome binding domain 5, transcript variant X1
75. GDI2 ENSGALG00000008169 243.22 1957.86 GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
76. RPL23 ENSGALG00000001634 237.99 1915.76 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
77. RPS11 ENSGALG00000017299 232.77 1873.74 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
78. H3-IX H3-IX 231.03 1859.73
79. RPS7 ENSGALG00000016392 231.03 1859.73 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
80. MDK ENSGALG00000008367 229.87 1850.40 midkine [Source:NCBI gene;Acc:423196]
81. NME2 ENSGALG00000002932 229.29 1845.73 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
82. EIF4G2 ENSGALG00000005587 228.71 1841.06 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
83. RPL38 ENSGALG00000001465 228.71 1841.06 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
84. RPS25 ENSGALG00000007699 227.54 1831.64 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
85. TCEB3 ENSGALG00000034625 226.38 1822.30 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
86. AKAP12 ENSGALG00000036240 221.74 1784.95 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
87. RPL7 ENSGALG00000035252 217.68 1752.27 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
88. SLC25A6_1 ENSGALG00000016691 217.68 1752.27 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
89. CRHOA CRHOA 216.52 1742.93
90. GNB2L1 ENSGALG00000000122 213.03 1714.84 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
91. H2AFZ ENSGALG00000014023 213.03 1714.84 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
92. ALDOC ENSGALG00000026077 210.71 1696.16 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
93. RPL35 ENSGALG00000035677 210.71 1696.16 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
94. BLMH ENSGALG00000004259 210.13 1691.49 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
95. ENSGALG00000028649 ENSGALG00000028649 209.55 1686.83
96. C5ORF13 C5ORF13 204.91 1649.47
97. HSP90B1 ENSGALG00000033789 204.91 1649.47 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
98. ATP5G3 202.00 1626.05 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
99. SSR1 ENSGALG00000012798 200.26 1612.04 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
100. RPL3 ENSGALG00000012172 197.94 1593.37 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA