Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s5.

Sample reads: 124,234. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3839.79 30908.36
2. EEF1A EEF1A 1606.20 12929.10
3. MT-ATP6 MT-ATP6 1110.25 8936.95
4. TMSB4X ENSGALG00000026383 1029.37 8285.91 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
5. RPS3A ENSGALG00000010077 927.69 7467.43 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. gga-mir-3533 ENSGALG00000027736 922.33 7424.29 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 820.05 6600.99 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPS10 ENSGALG00000002813 794.48 6395.16 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPL4 ENSGALG00000007711 744.53 5993.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
10. GAPDH ENSGALG00000014442 737.39 5935.62 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPLP1 ENSGALG00000030878 729.66 5873.39 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
12. RPLP0 ENSGALG00000023294 726.09 5844.66 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. RPL8 ENSGALG00000016232 631.54 5083.58 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
14. RPS23 ENSGALG00000015617 624.40 5026.10 ribosomal protein S23
15. RAN ENSGALG00000002569 575.05 4628.86 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
16. RPS8 ENSGALG00000010124 560.18 4509.16 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
17. MT-CO1 MT-CO1 531.64 4279.43
18. MT-ND5 MT-ND5 513.20 4131.00
19. MT-ND4 MT-ND4 493.58 3973.07
20. HMGB2 ENSGALG00000010745 489.41 3939.50 high mobility group box 2 [Source:NCBI gene;Acc:396482]
21. ENSGALG00000018384 ENSGALG00000018384 488.82 3934.75
22. MT-CYB MT-CYB 479.30 3858.12
23. RPL7A ENSGALG00000003197 472.17 3800.73 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
24. RPS4 RPS4 460.27 3704.94
25. RPL23A ENSGALG00000003966 437.08 3518.27 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
26. RPL15 ENSGALG00000011290 422.81 3403.41 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
27. RPL27A ENSGALG00000005948 414.49 3336.43 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
28. RPS6 ENSGALG00000015082 400.21 3221.49 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
29. SNRPD1 ENSGALG00000041334 394.27 3173.67 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
30. RPL27 ENSGALG00000002837 391.89 3154.52 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. PHB2 ENSGALG00000014567 385.94 3106.62 prohibitin 2 [Source:NCBI gene;Acc:771124]
32. HMGN2 HMGN2 385.35 3101.87
33. TXN ENSGALG00000015704 383.56 3087.46 thioredoxin [Source:NCBI gene;Acc:396437]
34. RPS28 ENSGALG00000024398 379.99 3058.73 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
35. CIRBP ENSGALG00000030918 368.70 2967.85 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
36. ANP32B ENSGALG00000037483 366.91 2953.44 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
37. RPLP2 ENSGALG00000034811 366.91 2953.44 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
38. RPSA 364.53 2934.28 ribosomal protein SA
39. RPL32 ENSGALG00000027142 360.37 2900.80 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL19 ENSGALG00000001658 357.99 2881.64 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
41. ENSGALG00000028649 ENSGALG00000028649 350.26 2819.42
42. ENSGALG00000002696 ENSGALG00000002696 349.07 2809.84
43. RPL26 RPL26 346.69 2790.68
44. RPS12 ENSGALG00000013990 346.69 2790.68 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. STMN1 ENSGALG00000001475 342.53 2757.19 stathmin 1 [Source:NCBI gene;Acc:396057]
46. MDK ENSGALG00000008367 341.34 2747.61 midkine [Source:NCBI gene;Acc:423196]
47. RPL5 ENSGALG00000005922 334.80 2694.97 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
48. HMGN5 ENSGALG00000007131 325.88 2623.17 high mobility group nucleosome binding domain 5, transcript variant X1
49. MARCKSL1 ENSGALG00000032335 320.53 2580.10 MARCKS like 1 [Source:NCBI gene;Acc:770764]
50. RPL18A 318.74 2565.70 ribosomal protein L18a
51. RPS21 ENSGALG00000005338 318.74 2565.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
52. PPIA ENSGALG00000028600 316.96 2551.37 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
53. RPS29 ENSGALG00000012229 316.96 2551.37 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
54. ENO1 ENSGALG00000002377 313.99 2527.46 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
55. RPS11 ENSGALG00000017299 306.85 2469.99 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
56. RPS2 ENSGALG00000005490 300.31 2417.34 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
57. gga-mir-3527 gga-mir-3527 299.71 2412.51
58. RPL14 ENSGALG00000043379 294.96 2374.28 ribosomal protein L14
59. RPL29 ENSGALG00000026978 294.96 2374.28 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
60. RPS16 ENSGALG00000026490 292.58 2355.12 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
61. RPS15 ENSGALG00000015195 290.79 2340.71 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
62. HSPA8 ENSGALG00000006512 284.25 2288.07 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
63. RPL12 ENSGALG00000008806 281.87 2268.91 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
64. RPL37 ENSGALG00000014833 280.09 2254.58 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
65. RPL13 ENSGALG00000006179 278.90 2245.00 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
66. RPL36AL ENSGALG00000004952 273.55 2201.94 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
67. RPS14 ENSGALG00000004588 268.20 2158.87 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. BLMH ENSGALG00000004259 265.22 2134.89 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
69. RPL23 ENSGALG00000001634 261.06 2101.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
70. RPS13 ENSGALG00000006096 259.28 2087.07 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
71. RPL21 ENSGALG00000027035 256.90 2067.91 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
72. RPL6 ENSGALG00000004818 250.95 2020.02 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
73. SET ENSGALG00000004701 250.36 2015.27 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
74. PSMC6 ENSGALG00000012408 248.57 2000.86 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
75. ATP5G3 246.79 1986.53 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
76. CRABP-I ENSGALG00000003193 245.60 1976.96 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
77. H3-IX H3-IX 245.00 1972.13
78. UBB ENSGALG00000004509 244.41 1967.38 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
79. NME2 ENSGALG00000002932 234.30 1886.00 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
80. RPL38 ENSGALG00000001465 233.11 1876.42 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
81. RPS25 ENSGALG00000007699 233.11 1876.42 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
82. GNB2L1 ENSGALG00000000122 225.97 1818.94 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
83. RPS15A ENSGALG00000006771 225.97 1818.94 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
84. LDHB ENSGALG00000035836 223.60 1799.87 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
85. TCEB3 ENSGALG00000034625 221.81 1785.46 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
86. ALDOC ENSGALG00000026077 218.24 1756.72 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
87. EIF4G2 ENSGALG00000005587 214.08 1723.24 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
88. ENSGALG00000018386 ENSGALG00000018386 213.49 1718.49
89. RPS7 ENSGALG00000016392 210.51 1694.50 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
90. MT-ND3 MT-ND3 209.92 1689.75
91. SSR1 ENSGALG00000012798 209.92 1689.75 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
92. RPL35 ENSGALG00000035677 208.73 1680.17 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
93. CRHOA CRHOA 208.13 1675.34
94. RPL3 ENSGALG00000012172 206.35 1661.01 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
95. RPL24 ENSGALG00000015339 204.57 1646.68 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
96. HSP90AB1 ENSGALG00000010175 203.97 1641.86 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
97. CCT4 ENSGALG00000008812 202.78 1632.28 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
98. RPL7 ENSGALG00000035252 202.78 1632.28 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
99. GDI2 ENSGALG00000008169 197.43 1589.21 GDP dissociation inhibitor 2 [Source:NCBI gene;Acc:395854]
100. SLC25A6_1 ENSGALG00000016691 197.43 1589.21 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA