Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s41.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5737.05 46180.61
2. EEF1A EEF1A 1730.37 13928.68
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1242.95 10005.18 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. MT-ATP6 MT-ATP6 1135.71 9141.94
5. RPS3A ENSGALG00000010077 1077.22 8671.13 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
6. RPS10 ENSGALG00000002813 935.86 7533.24 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPLP0 ENSGALG00000023294 916.37 7376.36 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPL8 ENSGALG00000016232 794.51 6395.44 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
9. gga-mir-3533 ENSGALG00000027736 755.52 6081.59 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPS23 ENSGALG00000015617 740.89 5963.82 ribosomal protein S23
11. RPS8 ENSGALG00000010124 736.02 5924.62 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
12. HMGB2 ENSGALG00000010745 721.40 5806.94 high mobility group box 2 [Source:NCBI gene;Acc:396482]
13. RPLP1 ENSGALG00000030878 711.65 5728.46 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
14. RPL4 ENSGALG00000007711 658.03 5296.84 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. TMSB4X ENSGALG00000026383 643.41 5179.15 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
16. RAN ENSGALG00000002569 623.91 5022.19 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
17. MT-CO1 MT-CO1 604.41 4865.22
18. MT-CYB MT-CYB 545.92 4394.40
19. HBZ ENSGALG00000023740 541.05 4355.20 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
20. RPL7A ENSGALG00000003197 497.18 4002.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
21. RPS4 RPS4 497.18 4002.07
22. GAPDH ENSGALG00000014442 492.30 3962.79 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. MDK ENSGALG00000008367 477.68 3845.10 midkine [Source:NCBI gene;Acc:423196]
24. RPL15 ENSGALG00000011290 467.93 3766.62 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
25. ENSGALG00000002696 ENSGALG00000002696 453.31 3648.94
26. MT-ND5 MT-ND5 453.31 3648.94
27. MT-ND4 MT-ND4 433.81 3491.97
28. SNRPD1 ENSGALG00000041334 433.81 3491.97 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
29. RPL23A ENSGALG00000003966 428.94 3452.77 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
30. RPL27 ENSGALG00000002837 428.94 3452.77 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPL19 ENSGALG00000001658 424.06 3413.49 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPS12 ENSGALG00000013990 414.32 3335.09 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
33. RPS6 ENSGALG00000015082 414.32 3335.09 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
34. RPL21 ENSGALG00000027035 409.44 3295.80 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
35. RPLP2 ENSGALG00000034811 409.44 3295.80 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
36. RPSA 409.44 3295.80 ribosomal protein SA
37. RPL27A ENSGALG00000005948 404.57 3256.60 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
38. PHB2 ENSGALG00000014567 399.69 3217.32 prohibitin 2 [Source:NCBI gene;Acc:771124]
39. RPL29 ENSGALG00000026978 399.69 3217.32 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPS21 ENSGALG00000005338 399.69 3217.32 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. RPL13 ENSGALG00000006179 394.82 3178.12 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
42. RPL26 RPL26 394.82 3178.12
43. RPS28 ENSGALG00000024398 394.82 3178.12 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
44. ENSGALG00000018384 ENSGALG00000018384 380.20 3060.44
45. HMGN5 ENSGALG00000007131 360.70 2903.47 high mobility group nucleosome binding domain 5, transcript variant X1
46. RPS15A ENSGALG00000006771 346.07 2785.70 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. ANP32B ENSGALG00000037483 341.20 2746.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
48. RPL36AL ENSGALG00000004952 336.33 2707.30 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
49. CIRBP ENSGALG00000030918 331.45 2668.02 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
50. CRHOA CRHOA 331.45 2668.02
51. RPL12 ENSGALG00000008806 331.45 2668.02 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
52. RPL5 ENSGALG00000005922 326.58 2628.82 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
53. RPL6 ENSGALG00000004818 326.58 2628.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
54. RPL10A ENSGALG00000002644 311.95 2511.05 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
55. RPS16 ENSGALG00000026490 311.95 2511.05 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPS7 ENSGALG00000016392 311.95 2511.05 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. gga-mir-3527 gga-mir-3527 311.95 2511.05
58. EIF4EBP1 ENSGALG00000003205 307.08 2471.85 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
59. TXN ENSGALG00000015704 297.33 2393.37 thioredoxin [Source:NCBI gene;Acc:396437]
60. CNN3 ENSGALG00000005597 292.46 2354.17 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
61. RPL37 ENSGALG00000014833 292.46 2354.17 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
62. RPS15 ENSGALG00000015195 292.46 2354.17 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPS2 ENSGALG00000005490 292.46 2354.17 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
64. RPS25 ENSGALG00000007699 292.46 2354.17 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
65. RPL32 ENSGALG00000027142 282.71 2275.69 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
66. RPL38 ENSGALG00000001465 277.83 2236.40 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
67. RPS14 ENSGALG00000004588 277.83 2236.40 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
68. SET ENSGALG00000004701 272.96 2197.20 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
69. PPIA ENSGALG00000028600 268.09 2158.00 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
70. STMN1 ENSGALG00000001475 268.09 2158.00 stathmin 1 [Source:NCBI gene;Acc:396057]
71. MT-ND3 MT-ND3 263.21 2118.72
72. RPL14 ENSGALG00000043379 263.21 2118.72 ribosomal protein L14
73. RPL7 ENSGALG00000035252 258.34 2079.52 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
74. H3-IX H3-IX 253.46 2040.24
75. ANO1 ENSGALG00000041808 248.59 2001.04 anoctamin 1 [Source:HGNC Symbol;Acc:HGNC:21625]
76. ENSGALG00000028649 ENSGALG00000028649 248.59 2001.04
77. GNB2L1 ENSGALG00000000122 243.71 1961.75 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
78. NUCKS1 ENSGALG00000000708 243.71 1961.75 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
79. HMGN2 HMGN2 238.84 1922.55
80. RPL35 ENSGALG00000035677 238.84 1922.55 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
81. MYL12A ENSGALG00000014854 233.97 1883.35 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
82. NME2 ENSGALG00000002932 233.97 1883.35 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
83. PNRC1 ENSGALG00000015780 233.97 1883.35 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
84. RPS29 ENSGALG00000012229 233.97 1883.35 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
85. TCEB3 ENSGALG00000034625 233.97 1883.35 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
86. RPL23 ENSGALG00000001634 229.09 1844.07 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. RPL3 ENSGALG00000012172 229.09 1844.07 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
88. RPS11 ENSGALG00000017299 229.09 1844.07 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
89. HBE 224.22 1804.87 hemoglobin subunit epsilon
90. RPL18A 224.22 1804.87 ribosomal protein L18a
91. AKR1D1 ENSGALG00000012834 214.47 1726.38 aldo-keto reductase family 1 member D1 [Source:NCBI gene;Acc:418107]
92. BLMH ENSGALG00000004259 214.47 1726.38 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
93. EIF2S1 ENSGALG00000009565 209.59 1687.10 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
94. RPS20 ENSGALG00000014432 209.59 1687.10 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
95. EEF1D 204.72 1647.90 eukaryotic translation elongation factor 1 delta, transcript variant X13
96. EIF5A2 ENSGALG00000009309 204.72 1647.90 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
97. FTH FTH 204.72 1647.90
98. ENSGALG00000028992 ENSGALG00000028992 199.85 1608.70
99. H3-IX_1 H3-IX_1 194.97 1569.42
100. LUM ENSGALG00000011271 194.97 1569.42 lumican [Source:NCBI gene;Acc:417891]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA