Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s9.

Sample reads: 152,331. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 2837.75 18631.40
2. EEF1A EEF1A 1552.40 10192.36
3. MT-ATP6 MT-ATP6 1502.47 9864.55
4. RPS23 ENSGALG00000015617 1394.75 9157.30 ribosomal protein S23
5. RPLP0 ENSGALG00000023294 1344.82 8829.49 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. RPLP1 ENSGALG00000030878 1323.50 8689.51 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. gga-mir-3533 ENSGALG00000027736 1233.73 8100.12 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. GAPDH ENSGALG00000014442 1180.43 7750.18 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. RPS10 ENSGALG00000002813 1036.24 6803.49 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPL27A ENSGALG00000005948 954.33 6265.70 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
11. gga-mir-3527 gga-mir-3527 952.09 6251.00
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 937.50 6155.21 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. RPL4 ENSGALG00000007711 906.08 5948.92 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPS15 ENSGALG00000015195 865.69 5683.73 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
15. MT-CYB MT-CYB 864.56 5676.31
16. RPL27 ENSGALG00000002837 849.42 5576.91 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
17. RPS12 ENSGALG00000013990 839.32 5510.60 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
18. RPS29 ENSGALG00000012229 839.32 5510.60 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
19. RPS3A ENSGALG00000010077 818.00 5370.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
20. RPL32 ENSGALG00000027142 816.32 5359.59 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
21. TMSB4X ENSGALG00000026383 812.95 5337.47 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
22. RPL8 ENSGALG00000016232 800.05 5252.77 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPS8 ENSGALG00000010124 780.97 5127.50 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
24. RPS6 ENSGALG00000015082 774.24 5083.31 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
25. RPS2 ENSGALG00000005490 760.77 4994.88 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
26. MT-ND5 MT-ND5 750.11 4924.89
27. RPL23A ENSGALG00000003966 747.31 4906.50 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
28. RPSA 738.89 4851.22 ribosomal protein SA
29. MT-CO1 MT-CO1 718.13 4714.92
30. RPL19 ENSGALG00000001658 711.96 4674.41 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPS28 ENSGALG00000024398 711.96 4674.41 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
32. PPIA ENSGALG00000028600 704.67 4626.55 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
33. RPL26 RPL26 704.67 4626.55
34. RPL13 ENSGALG00000006179 701.30 4604.42 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
35. NME2 ENSGALG00000002932 636.78 4180.81 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
36. RPL7A ENSGALG00000003197 636.22 4177.14 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
37. RPL15 ENSGALG00000011290 607.61 3989.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
38. RPL18A 600.88 3945.11 ribosomal protein L18a
39. RPS14 ENSGALG00000004588 598.63 3930.34 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
40. RPL36AL ENSGALG00000004952 590.78 3878.80 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
41. RPS4 RPS4 574.51 3771.98
42. STMN1 ENSGALG00000001475 572.26 3757.20 stathmin 1 [Source:NCBI gene;Acc:396057]
43. RPS21 ENSGALG00000005338 569.46 3738.82 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
44. RPL12 ENSGALG00000008806 564.41 3705.66 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
45. RPS16 ENSGALG00000026490 554.87 3643.03 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. RPL35 ENSGALG00000035677 546.45 3587.75 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
47. RPL29 ENSGALG00000026978 540.84 3550.91 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
48. RPS27A ENSGALG00000036790 540.28 3547.24 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
49. RPL21 ENSGALG00000027035 534.67 3510.40 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
50. GNB2L1 ENSGALG00000000122 532.99 3499.37 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
51. RPL38 ENSGALG00000001465 527.38 3462.54 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
52. RPLP2 ENSGALG00000034811 526.82 3458.86 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
53. ENO1 ENSGALG00000002377 524.01 3440.42 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
54. RPS11 ENSGALG00000017299 522.33 3429.39 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
55. UBB ENSGALG00000004509 516.16 3388.88 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
56. MT-ND1 MT-ND1 510.55 3352.04
57. RPS13 ENSGALG00000006096 507.74 3333.59 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
58. MT-ND3 MT-ND3 507.18 3329.92
59. RPL5 ENSGALG00000005922 506.06 3322.56 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
60. RPL24 ENSGALG00000015339 497.08 3263.60 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
61. ENSGALG00000018384 ENSGALG00000018384 492.59 3234.13
62. HBZ ENSGALG00000023740 487.55 3201.04 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
63. ENSGALG00000002696 ENSGALG00000002696 463.42 3042.61
64. RPL14 ENSGALG00000043379 463.42 3042.61 ribosomal protein L14
65. RPS15A ENSGALG00000006771 456.69 2998.42 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
66. RPL23 ENSGALG00000001634 456.13 2994.75 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
67. RPL7 ENSGALG00000035252 454.44 2983.65 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
68. TCEB3 ENSGALG00000034625 442.66 2906.31 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
69. SNRPD1 ENSGALG00000041334 440.42 2891.60 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
70. RPL6 ENSGALG00000004818 439.86 2887.92 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
71. RPL36 ENSGALG00000000474 435.93 2862.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. MT-ND4 MT-ND4 421.34 2766.33
73. MARCKSL1 ENSGALG00000032335 410.68 2696.34 MARCKS like 1 [Source:NCBI gene;Acc:770764]
74. RPS25 ENSGALG00000007699 407.88 2677.96 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. RPS7 ENSGALG00000016392 397.22 2607.97 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
76. RPS20 ENSGALG00000014432 390.48 2563.72 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
77. ENSGALG00000028992 ENSGALG00000028992 388.24 2549.01
78. RPS17 ENSGALG00000002157 380.39 2497.47 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
79. RPL37 ENSGALG00000014833 378.14 2482.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
80. HBE 352.33 2313.24 hemoglobin subunit epsilon
81. HMGN2 HMGN2 351.21 2305.89
82. FTH FTH 346.16 2272.73
83. TXN ENSGALG00000015704 342.80 2250.67 thioredoxin [Source:NCBI gene;Acc:396437]
84. ANP32B ENSGALG00000037483 338.87 2224.87 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. ATP5G3 336.62 2210.10 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
86. EEF1D 330.45 2169.59 eukaryotic translation elongation factor 1 delta, transcript variant X13
87. RPL10A ENSGALG00000002644 327.09 2147.53 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. HBG1 HBG1 323.16 2121.72
89. EIF1 ENSGALG00000028517 302.96 1989.10 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
90. ENSGALG00000018386 ENSGALG00000018386 302.40 1985.42
91. RPL31 ENSGALG00000016775 302.40 1985.42 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
92. LDHB ENSGALG00000035836 297.35 1952.27 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
93. RPL3 ENSGALG00000012172 292.86 1922.79 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. ALDOC ENSGALG00000026077 292.30 1919.11 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
95. PRDX1 ENSGALG00000010243 290.06 1904.40 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. TUBB2B ENSGALG00000012821 283.33 1860.22 tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
97. DYL1 ENSGALG00000007153 278.84 1830.74 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
98. EIF5A2 ENSGALG00000009309 277.15 1819.64 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
99. RAN ENSGALG00000002569 272.11 1786.55 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
100. SLC25A6_1 ENSGALG00000016691 270.42 1775.46 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA