Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s3.

Sample reads: 152,200. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3337.26 21928.10
2. MT-ATP6 MT-ATP6 1791.38 11770.60
3. EEF1A EEF1A 1624.49 10674.02
4. RPLP1 ENSGALG00000030878 1488.52 9780.60 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. RPS23 ENSGALG00000015617 1295.85 8514.63 ribosomal protein S23
6. RPLP0 ENSGALG00000023294 1229.48 8078.53 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. GAPDH ENSGALG00000014442 1224.33 8044.69 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 1181.15 7760.97 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS10 ENSGALG00000002813 1147.00 7536.58 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. RPS8 ENSGALG00000010124 1014.90 6668.59 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. RPS6 ENSGALG00000015082 979.46 6435.73 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
12. RPS12 ENSGALG00000013990 976.88 6418.78 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
13. gga-mir-3527 gga-mir-3527 972.37 6389.14
14. RPS3A ENSGALG00000010077 942.73 6194.39 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
15. RPL27A ENSGALG00000005948 935.00 6143.60 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
16. RPL19 ENSGALG00000001658 907.29 5961.52 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
17. ENSGALG00000018384 ENSGALG00000018384 898.91 5906.46
18. RPL8 ENSGALG00000016232 895.69 5885.30 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPL32 ENSGALG00000027142 886.67 5826.03 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
20. RPL27 ENSGALG00000002837 879.58 5779.45 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
21. gga-mir-3533 ENSGALG00000027736 875.72 5754.08 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
22. RPSA 858.32 5639.75 ribosomal protein SA
23. MT-CO1 MT-CO1 857.67 5635.48
24. MT-CYB MT-CYB 847.36 5567.74
25. RPS15 ENSGALG00000015195 831.90 5466.16 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
26. RPL4 ENSGALG00000007711 811.28 5330.67 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
27. RPL23A ENSGALG00000003966 802.26 5271.40 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
28. RPL26 RPL26 786.79 5169.75
29. RPS29 ENSGALG00000012229 784.21 5152.80 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
30. RPS28 ENSGALG00000024398 756.51 4970.79 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
31. RPL7A ENSGALG00000003197 754.57 4958.05 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
32. RPS4 RPS4 715.26 4699.75
33. RPS11 ENSGALG00000017299 713.33 4687.07 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
34. ENSGALG00000018386 ENSGALG00000018386 703.02 4619.33
35. RPS2 ENSGALG00000005490 694.00 4560.06 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
36. MT-ND5 MT-ND5 677.25 4450.00
37. TMSB4X ENSGALG00000026383 672.74 4420.37 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
38. RPL29 ENSGALG00000026978 640.52 4208.66 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPL18A 632.14 4153.60 ribosomal protein L18a
40. RPS21 ENSGALG00000005338 628.92 4132.44 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. ENSGALG00000002696 ENSGALG00000002696 598.63 3933.41
42. RPS16 ENSGALG00000026490 594.77 3908.05 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. PPIA ENSGALG00000028600 590.25 3878.35 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
44. RPS27A ENSGALG00000036790 584.46 3840.31 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
45. RPL36AL ENSGALG00000004952 580.59 3814.88 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
46. RPS14 ENSGALG00000004588 578.01 3797.92 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
47. RPL13 ENSGALG00000006179 574.79 3776.77 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
48. RPL38 ENSGALG00000001465 570.92 3751.34 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
49. RPL23 ENSGALG00000001634 568.99 3738.66 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
50. RPLP2 ENSGALG00000034811 568.99 3738.66 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
51. RPL12 ENSGALG00000008806 568.35 3734.45 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
52. RPL15 ENSGALG00000011290 566.41 3721.70 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
53. NME2 ENSGALG00000002932 565.77 3717.50 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
54. RPL24 ENSGALG00000015339 560.61 3683.59 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
55. RPL5 ENSGALG00000005922 549.66 3611.65 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
56. CRABP-I ENSGALG00000003193 549.01 3607.37 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
57. RPS7 ENSGALG00000016392 538.70 3539.63 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
58. RPL14 ENSGALG00000043379 531.62 3493.11 ribosomal protein L14
59. RPS20 ENSGALG00000014432 527.10 3463.41 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
60. RPL21 ENSGALG00000027035 524.53 3446.52 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
61. RPS15A ENSGALG00000006771 493.60 3243.29 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. GNB2L1 ENSGALG00000000122 483.29 3175.55 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
63. RPL35 ENSGALG00000035677 483.29 3175.55 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
64. RPL7 ENSGALG00000035252 483.29 3175.55 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
65. ENO1 ENSGALG00000002377 482.00 3167.07 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
66. RPS13 ENSGALG00000006096 476.20 3128.96 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
67. RPS25 ENSGALG00000007699 469.75 3086.58 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
68. SNRPD1 ENSGALG00000041334 453.65 2980.79 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
69. TCEB3 ENSGALG00000034625 443.98 2917.26 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
70. ENSGALG00000028992 ENSGALG00000028992 443.34 2913.05
71. MT-ND3 MT-ND3 436.25 2866.46
72. MT-ND4 MT-ND4 428.51 2815.61
73. RPL6 ENSGALG00000004818 426.58 2802.93 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
74. MT-ND1 MT-ND1 419.49 2756.34
75. RPS17 ENSGALG00000002157 414.34 2722.50 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
76. RPL10A ENSGALG00000002644 411.12 2701.34 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. STMN1 ENSGALG00000001475 398.23 2616.65 stathmin 1 [Source:NCBI gene;Acc:396057]
78. RPL36 ENSGALG00000000474 381.47 2506.52 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
79. RAN ENSGALG00000002569 376.96 2476.89 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
80. UBB ENSGALG00000004509 376.32 2472.68 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
81. MDK ENSGALG00000008367 375.03 2464.21 midkine [Source:NCBI gene;Acc:423196]
82. HBZ ENSGALG00000023740 371.81 2443.05 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
83. MT-ND6 MT-ND6 358.92 2358.35
84. FTH FTH 356.34 2341.40
85. EEF1D 349.90 2299.08 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. RPL37 ENSGALG00000014833 347.97 2286.40 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
87. ANP32B ENSGALG00000037483 345.39 2269.45 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
88. HSPA8 ENSGALG00000006512 329.92 2167.80 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
89. LDHB ENSGALG00000035836 320.26 2104.33 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. MARCKSL1 ENSGALG00000032335 319.61 2100.06 MARCKS like 1 [Source:NCBI gene;Acc:770764]
91. HMGN2 HMGN2 314.46 2066.22
92. ATP5G3 313.17 2057.74 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
93. RPL3 ENSGALG00000012172 313.17 2057.74 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. MIF ENSGALG00000006326 304.79 2002.68 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. RPL31 ENSGALG00000016775 298.35 1960.37 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
96. RPL22 ENSGALG00000000719 295.13 1939.21 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
97. RPS3 ENSGALG00000017330 291.26 1913.78 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
98. HBE 287.39 1888.35 hemoglobin subunit epsilon
99. TXN ENSGALG00000015704 281.60 1850.31 thioredoxin [Source:NCBI gene;Acc:396437]
100. DYL1 ENSGALG00000007153 267.42 1757.13 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA