Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s18.

Sample reads: 152,341. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4221.27 27710.51
2. RPLP1 ENSGALG00000030878 1777.38 11667.60 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
3. EEF1A EEF1A 1775.16 11653.03
4. RPS23 ENSGALG00000015617 1566.31 10282.04 ribosomal protein S23
5. MT-ATP6 MT-ATP6 1439.68 9450.77
6. RPS10 ENSGALG00000002813 1270.83 8342.36 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 1199.73 7875.62 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. RPLP0 ENSGALG00000023294 1179.73 7744.33 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. GAPDH ENSGALG00000014442 1090.87 7161.01 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. gga-mir-3527 gga-mir-3527 1048.65 6883.86
11. RPS6 ENSGALG00000015082 1024.21 6723.42 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
12. RPS8 ENSGALG00000010124 999.78 6563.05 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
13. RPS12 ENSGALG00000013990 997.55 6548.41 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
14. RPS3A ENSGALG00000010077 970.89 6373.40 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
15. RPL32 ENSGALG00000027142 962.01 6315.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
16. MT-CO1 MT-CO1 959.78 6300.47
17. RPL4 ENSGALG00000007711 897.58 5892.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
18. RPL27A ENSGALG00000005948 870.92 5717.15 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
19. RPL8 ENSGALG00000016232 870.92 5717.15 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. gga-mir-3533 ENSGALG00000027736 862.03 5658.79 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
21. RPL19 ENSGALG00000001658 857.59 5629.65 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
22. RPL7A ENSGALG00000003197 855.36 5615.01 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPS28 ENSGALG00000024398 853.14 5600.43 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
24. RPSA 853.14 5600.43 ribosomal protein SA
25. RPL23A ENSGALG00000003966 850.92 5585.86 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
26. RPS15 ENSGALG00000015195 835.37 5483.78 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
27. RPL26 RPL26 802.04 5264.99
28. RPS29 ENSGALG00000012229 795.38 5221.27 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
29. RPL27 ENSGALG00000002837 766.49 5031.62 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. MT-CYB MT-CYB 757.61 4973.33
31. RPL36AL ENSGALG00000004952 735.39 4827.47 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
32. RPL13 ENSGALG00000006179 708.73 4652.46 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
33. RPL12 ENSGALG00000008806 706.51 4637.88 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
34. RPS4 RPS4 706.51 4637.88
35. RPS21 ENSGALG00000005338 704.29 4623.31 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPS2 ENSGALG00000005490 702.06 4608.67 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
37. ENSGALG00000018384 ENSGALG00000018384 673.18 4419.09
38. RPS14 ENSGALG00000004588 650.96 4273.22 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
39. RPS16 ENSGALG00000026490 642.08 4214.93 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
40. RPL23 ENSGALG00000001634 639.86 4200.36 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
41. RPL18A 619.86 4069.07 ribosomal protein L18a
42. TMSB4X ENSGALG00000026383 619.86 4069.07 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
43. RPL29 ENSGALG00000026978 617.64 4054.50 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
44. RPL21 ENSGALG00000027035 608.75 3996.14 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. PPIA ENSGALG00000028600 586.53 3850.27 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
46. RPS13 ENSGALG00000006096 577.65 3791.98 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
47. RPL5 ENSGALG00000005922 575.43 3777.41 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
48. MT-ND3 MT-ND3 570.98 3748.20
49. RPS11 ENSGALG00000017299 568.76 3733.62 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. NME2 ENSGALG00000002932 557.65 3660.69 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
51. RPS27A ENSGALG00000036790 557.65 3660.69 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. MDK ENSGALG00000008367 550.99 3616.97 midkine [Source:NCBI gene;Acc:423196]
53. MT-ND5 MT-ND5 544.32 3573.19
54. RPS20 ENSGALG00000014432 537.66 3529.47 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
55. ENSGALG00000002696 ENSGALG00000002696 535.44 3514.89
56. RPL24 ENSGALG00000015339 524.33 3441.96 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
57. RPL35 ENSGALG00000035677 519.88 3412.75 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
58. RPL38 ENSGALG00000001465 519.88 3412.75 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
59. RPL7 ENSGALG00000035252 519.88 3412.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
60. RPL6 ENSGALG00000004818 508.77 3339.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. RPS15A ENSGALG00000006771 508.77 3339.82 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. ENSGALG00000028992 ENSGALG00000028992 504.33 3310.67
63. RPS7 ENSGALG00000016392 497.67 3266.95 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. RPL14 ENSGALG00000043379 493.22 3237.74 ribosomal protein L14
65. RPL15 ENSGALG00000011290 493.22 3237.74 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
66. EEF1D 477.67 3135.66 eukaryotic translation elongation factor 1 delta, transcript variant X13
67. RPLP2 ENSGALG00000034811 473.23 3106.52 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
68. RPS25 ENSGALG00000007699 462.12 3033.59 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. GNB2L1 ENSGALG00000000122 459.90 3019.01 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
70. TCEB3 ENSGALG00000034625 444.34 2916.87 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
71. SNRPD1 ENSGALG00000041334 442.12 2902.30 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
72. MT-ND1 MT-ND1 435.46 2858.58
73. RPL36 ENSGALG00000000474 424.35 2785.64 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
74. MT-ND4 MT-ND4 413.24 2712.71
75. ENSGALG00000018386 ENSGALG00000018386 397.69 2610.63
76. RPL10A ENSGALG00000002644 391.02 2566.85 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. RPL3 ENSGALG00000012172 368.81 2421.05 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
78. STMN1 ENSGALG00000001475 364.36 2391.84 stathmin 1 [Source:NCBI gene;Acc:396057]
79. UBB ENSGALG00000004509 353.25 2318.91 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
80. ANP32B ENSGALG00000037483 344.37 2260.62 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
81. RPL37 ENSGALG00000014833 344.37 2260.62 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
82. RPS17 ENSGALG00000002157 344.37 2260.62 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
83. ENO1 ENSGALG00000002377 337.70 2216.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
84. RPS3 ENSGALG00000017330 311.04 2041.82 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
85. EEF1B2 ENSGALG00000008590 306.60 2012.67 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
86. TXN ENSGALG00000015704 304.38 1998.10 thioredoxin [Source:NCBI gene;Acc:396437]
87. SLC25A6_1 ENSGALG00000016691 302.15 1983.46 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
88. MT-ND6 MT-ND6 297.71 1954.32
89. RPS24 ENSGALG00000004871 293.27 1925.17 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
90. RPL31 ENSGALG00000016775 291.05 1910.60 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
91. NUCKS1 ENSGALG00000000708 284.38 1866.81 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
92. FTH FTH 279.94 1837.67
93. MIF ENSGALG00000006326 279.94 1837.67 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
94. CRHOA CRHOA 277.72 1823.09
95. PRDX1 ENSGALG00000010243 273.27 1793.88 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
96. HMGN2 HMGN2 266.61 1750.16
97. ATP5G3 262.16 1720.95 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
98. LDHB ENSGALG00000035836 259.94 1706.38 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
99. RPL22 ENSGALG00000000719 259.94 1706.38 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
100. RAN ENSGALG00000002569 257.72 1691.80 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA