Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s29.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 4344.43 34969.42
2. MT-CO3 MT-CO3 3938.17 31699.33
3. MT-ND5 MT-ND5 3616.09 29106.82
4. MT-CYB MT-CYB 2236.27 18000.30
5. EEF1A EEF1A 1958.11 15761.32
6. MT-ND1 MT-ND1 1916.02 15422.53
7. MT-ND4 MT-ND4 1839.16 14803.86
8. MT-CO1 MT-CO1 1703.74 13713.83
9. gga-mir-3527 gga-mir-3527 1700.08 13684.37
10. GAPDH ENSGALG00000014442 1566.48 12608.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. gga-mir-3533 ENSGALG00000027736 1478.64 11901.95 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND3 MT-ND3 1431.06 11518.96
13. PPIA ENSGALG00000028600 1174.86 9456.75 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 927.81 7468.18 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 689.91 5553.26 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. MDK ENSGALG00000008367 655.14 5273.39 midkine [Source:NCBI gene;Acc:423196]
17. RPL8 ENSGALG00000016232 647.82 5214.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. RPL15 ENSGALG00000011290 565.47 4551.61 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. RPL7A ENSGALG00000003197 563.64 4536.88 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
20. EIF4G2 ENSGALG00000005587 497.76 4006.60 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
21. STMN1 ENSGALG00000001475 462.99 3726.72 stathmin 1 [Source:NCBI gene;Acc:396057]
22. RPL18A 459.33 3697.26 ribosomal protein L18a
23. RPS20 ENSGALG00000014432 459.33 3697.26 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
24. ENO1 ENSGALG00000002377 455.67 3667.80 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
25. RPL26 RPL26 453.84 3653.07
26. RPS3 ENSGALG00000017330 446.52 3594.15 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
27. RPL7 ENSGALG00000035252 435.54 3505.77 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. RPL31 ENSGALG00000016775 417.24 3358.47 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
29. EEF1B2 ENSGALG00000008590 398.94 3211.17 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
30. RPS23 ENSGALG00000015617 393.45 3166.98 ribosomal protein S23
31. RPS7 ENSGALG00000016392 389.79 3137.52 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
32. CIRBP ENSGALG00000030918 386.13 3108.06 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. KRT19 ENSGALG00000019719 384.30 3093.33 keratin 19 [Source:NCBI gene;Acc:395861]
34. RPS4 RPS4 384.30 3093.33
35. LUM ENSGALG00000011271 382.47 3078.60 lumican [Source:NCBI gene;Acc:417891]
36. RPS27A ENSGALG00000036790 382.47 3078.60 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. TMSB4X ENSGALG00000026383 378.81 3049.14 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
38. ATP6V0C ENSGALG00000009229 364.17 2931.30 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
39. MT-ND2 MT-ND2 360.51 2901.84
40. ENSGALG00000018384 ENSGALG00000018384 355.02 2857.65
41. RPL27A ENSGALG00000005948 349.53 2813.46 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
42. RPS6 ENSGALG00000015082 323.91 2607.23 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
43. H3-IX H3-IX 301.95 2430.47
44. RAN ENSGALG00000002569 300.12 2415.74 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
45. RPS12 ENSGALG00000013990 300.12 2415.74 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. ENSGALG00000018386 ENSGALG00000018386 296.46 2386.28
47. RPSA 296.46 2386.28 ribosomal protein SA
48. ENSGALG00000028992 ENSGALG00000028992 290.97 2342.09
49. RPS16 ENSGALG00000026490 287.31 2312.63 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
50. RPL23 ENSGALG00000001634 283.65 2283.17 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
51. RPL21 ENSGALG00000027035 279.99 2253.71 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
52. RPS10 ENSGALG00000002813 272.67 2194.79 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
53. RPS11 ENSGALG00000017299 269.01 2165.33 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. RPL32 ENSGALG00000027142 265.35 2135.87 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. SLC25A6_1 ENSGALG00000016691 265.35 2135.87 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
56. RPL36 ENSGALG00000000474 259.86 2091.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. CNN3 ENSGALG00000005597 258.03 2076.95 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
58. RPL23A ENSGALG00000003966 256.20 2062.22 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. NDUFB9 ENSGALG00000042242 254.37 2047.49 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
60. TPT1 ENSGALG00000028872 254.37 2047.49 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
61. RPS15A ENSGALG00000006771 248.88 2003.30 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. EIF1 ENSGALG00000028517 245.22 1973.84 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
63. RPS29 ENSGALG00000012229 243.39 1959.11 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
64. CRHOA CRHOA 241.56 1944.38
65. RPL35A ENSGALG00000007611, ENSGALG00000041230 239.73 1929.65 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
66. ATP5G3 234.24 1885.46 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
67. FKBP4 ENSGALG00000014331 232.41 1870.73 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
68. RPL27 ENSGALG00000002837 232.41 1870.73 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
69. EIF4EBP1 ENSGALG00000003205 228.75 1841.27 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
70. RPLP1 ENSGALG00000030878 225.09 1811.81 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
71. RPS14 ENSGALG00000004588 225.09 1811.81 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
72. ANP32B ENSGALG00000037483 221.43 1782.35 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
73. H2AFZ ENSGALG00000014023 221.43 1782.35 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
74. RPL14 ENSGALG00000043379 219.60 1767.62 ribosomal protein L14
75. RPL38 ENSGALG00000001465 214.11 1723.43 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
76. RPS24 ENSGALG00000004871 212.28 1708.70 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
77. SNRPG ENSGALG00000028409 210.45 1693.97 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
78. ENSGALG00000002696 ENSGALG00000002696 206.79 1664.51
79. RPL4 ENSGALG00000007711 204.96 1649.77 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
80. HMGN5 ENSGALG00000007131 203.13 1635.04 high mobility group nucleosome binding domain 5, transcript variant X1
81. RPS3A ENSGALG00000010077 203.13 1635.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
82. TXN ENSGALG00000015704 203.13 1635.04 thioredoxin [Source:NCBI gene;Acc:396437]
83. TTR ENSGALG00000015143 199.47 1605.58 transthyretin [Source:NCBI gene;Acc:396277]
84. RPL29 ENSGALG00000026978 197.64 1590.85 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
85. RPL3 ENSGALG00000012172 195.81 1576.12 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
86. RPS15 ENSGALG00000015195 195.81 1576.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
87. ERH ENSGALG00000017384 192.15 1546.66 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
88. HMGN2 HMGN2 192.15 1546.66
89. RPL13 ENSGALG00000006179 190.32 1531.93 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
90. EIF3F ENSGALG00000005326 188.49 1517.20 eukaryotic translation initiation factor 3 subunit F
91. HNRNPA3 ENSGALG00000009250 186.66 1502.47 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
92. S100A11 ENSGALG00000036711 184.83 1487.74 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
93. LDHB ENSGALG00000035836 179.34 1443.55 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
94. RPL12 ENSGALG00000008806 179.34 1443.55 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
95. EIF4A3 ENSGALG00000008530 177.51 1428.82 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
96. EIF5A2 ENSGALG00000009309 175.68 1414.09 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
97. RPL10A ENSGALG00000002644 175.68 1414.09 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
98. HBE 172.02 1384.63 hemoglobin subunit epsilon
99. EEF1D 170.19 1369.90 eukaryotic translation elongation factor 1 delta, transcript variant X13
100. HMGB1 ENSGALG00000042875 170.19 1369.90 high mobility group box 1 [Source:NCBI gene;Acc:395724]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA