Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s2.

Sample reads: 124,227. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4005.76 32246.68
2. MT-ND5 MT-ND5 3749.29 30182.08
3. MT-ATP6 MT-ATP6 3690.02 29704.95
4. gga-mir-3527 gga-mir-3527 2214.18 17824.32
5. MT-CYB MT-CYB 2132.97 17170.57
6. MT-CO1 MT-CO1 1834.89 14771.01
7. EEF1A EEF1A 1685.57 13568.97
8. MT-ND4 MT-ND4 1565.60 12603.20
9. gga-mir-3533 ENSGALG00000027736 1515.73 12201.74 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND1 MT-ND1 1469.57 11830.15
11. GAPDH ENSGALG00000014442 1159.52 9334.23 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 1097.97 8838.74
13. PPIA ENSGALG00000028600 1048.96 8444.21 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 933.26 7512.82 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL5 ENSGALG00000005922 781.95 6294.76 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 573.35 4615.51 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPS3 ENSGALG00000017330 566.23 4558.20 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
18. RPL26 RPL26 520.63 4191.11
19. RPL15 ENSGALG00000011290 520.06 4186.52 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL7 ENSGALG00000035252 494.70 3982.37 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. MDK ENSGALG00000008367 487.01 3920.47 midkine [Source:NCBI gene;Acc:423196]
22. RPS7 ENSGALG00000016392 479.03 3856.23 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. CIRBP ENSGALG00000030918 473.61 3812.60 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
24. EIF4G2 ENSGALG00000005587 449.11 3615.37 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPS23 ENSGALG00000015617 447.11 3599.27 ribosomal protein S23
26. RAN ENSGALG00000002569 437.71 3523.60 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
27. ATP6V0C ENSGALG00000009229 435.14 3502.91 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
28. RPL18A 424.03 3413.47 ribosomal protein L18a
29. LDHB ENSGALG00000035836 413.77 3330.88 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
30. RPS10 ENSGALG00000002813 393.25 3165.69 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. RPL27A ENSGALG00000005948 392.97 3163.44 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL7A ENSGALG00000003197 386.98 3115.22 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
33. ENO1 ENSGALG00000002377 384.42 3094.61 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
34. RPL23 ENSGALG00000001634 382.99 3083.10 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. STMN1 ENSGALG00000001475 382.14 3076.26 stathmin 1 [Source:NCBI gene;Acc:396057]
36. RPL31 ENSGALG00000016775 370.17 2979.90 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
37. RPS20 ENSGALG00000014432 357.63 2878.95 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
38. TMSB4X ENSGALG00000026383 347.37 2796.36 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
39. EIF1 ENSGALG00000028517 331.13 2665.62 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
40. RPS27A ENSGALG00000036790 322.01 2592.21 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. H3-IX H3-IX 318.31 2562.42
42. ATP5G3 314.32 2530.30 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
43. RPS6 ENSGALG00000015082 308.62 2484.42 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
44. RPS4 RPS4 307.48 2475.24
45. RPS16 ENSGALG00000026490 304.06 2447.71 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
46. FKBP4 ENSGALG00000014331 294.65 2371.96 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
47. RPS11 ENSGALG00000017299 284.97 2294.03 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. H2AFZ ENSGALG00000014023 283.83 2284.85 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
49. RPL27 ENSGALG00000002837 280.69 2259.58 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. RPS12 ENSGALG00000013990 277.27 2232.05 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. ENSGALG00000028992 ENSGALG00000028992 274.71 2211.44
52. RPL35A ENSGALG00000007611, ENSGALG00000041230 273.28 2199.93 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
53. RPS29 ENSGALG00000012229 273.28 2199.93 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
54. EEF1B2 ENSGALG00000008590 272.43 2193.08 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
55. RPS15A ENSGALG00000006771 270.15 2174.73 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
56. HMGN5 ENSGALG00000007131 267.01 2149.45 high mobility group nucleosome binding domain 5, transcript variant X1
57. RPS15 ENSGALG00000015195 266.73 2147.20 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
58. RPS24 ENSGALG00000004871 266.16 2142.61 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
59. MT-ND2 MT-ND2 265.30 2135.69
60. SLC25A6_1 ENSGALG00000016691 265.02 2133.43 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
61. RPL23A ENSGALG00000003966 264.45 2128.84 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
62. RPL14 ENSGALG00000043379 263.31 2119.67 ribosomal protein L14
63. SNRPG ENSGALG00000028409 261.31 2103.57 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
64. RPL32 ENSGALG00000027142 253.90 2043.91 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
65. RPL21 ENSGALG00000027035 252.48 2032.48 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. RPSA 249.63 2009.54 ribosomal protein SA
67. RPL36 ENSGALG00000000474 242.79 1954.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
68. RPL6 ENSGALG00000004818 242.22 1949.89 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
69. RPL4 ENSGALG00000007711 241.08 1940.71 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
70. ERH ENSGALG00000017384 236.81 1906.34 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
71. HNRNPDL ENSGALG00000023199 235.95 1899.42 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
72. BTF3L4 ENSGALG00000010570 232.25 1869.63 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
73. RPS14 ENSGALG00000004588 229.68 1848.94 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
74. TPT1 ENSGALG00000028872 227.12 1828.33 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
75. EIF3F ENSGALG00000005326 224.27 1805.39 eukaryotic translation initiation factor 3 subunit F
76. MIF ENSGALG00000006326 220.28 1773.27 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
77. HSPE1 ENSGALG00000009070 218.85 1761.76 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
78. NDUFB9 ENSGALG00000042242 216.57 1743.41 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
79. RPS3A ENSGALG00000010077 215.72 1736.56 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
80. SNRPE ENSGALG00000000137 212.30 1709.03 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
81. RPS21 ENSGALG00000005338 211.73 1704.44 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
82. RPL13 ENSGALG00000006179 210.30 1692.93 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
83. RPL10A ENSGALG00000002644 206.88 1665.40 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
84. RPLP1 ENSGALG00000030878 204.32 1644.79 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
85. CDK1 ENSGALG00000003085 204.04 1642.54 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
86. RPL12 ENSGALG00000008806 201.19 1619.60 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
87. ENSGALG00000002696 ENSGALG00000002696 198.05 1594.32
88. EIF4EBP1 ENSGALG00000003205 195.20 1571.38 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
89. RPL38 ENSGALG00000001465 194.06 1562.20 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
90. HMGN2 HMGN2 189.79 1527.82
91. PRDX1 ENSGALG00000010243 188.93 1520.90 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. RPL29 ENSGALG00000026978 188.65 1518.65 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
93. RPL3 ENSGALG00000012172 186.37 1500.29 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. CRHOA CRHOA 184.94 1488.78
95. HNRNPA3 ENSGALG00000009250 182.95 1472.76 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
96. KPNA2 ENSGALG00000003584 182.66 1470.43 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
97. TCEB3 ENSGALG00000034625 180.95 1456.66 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
98. ENSGALG00000018384 ENSGALG00000018384 178.10 1433.72
99. SLC25A6 ENSGALG00000016691 176.68 1422.29 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. HSPA8 ENSGALG00000006512 174.97 1408.52 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA