Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_2, section s60.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ND5 MT-ND5 4456.49 35874.62
2. MT-ATP6 MT-ATP6 3799.05 30582.25
3. MT-CO3 MT-CO3 3174.89 25557.78
4. MT-CYB MT-CYB 2163.75 17418.13
5. EEF1A EEF1A 1810.06 14570.93
6. MT-ND4 MT-ND4 1722.68 13867.53
7. gga-mir-3533 ENSGALG00000027736 1248.32 10048.94 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. PPIA ENSGALG00000028600 1240.00 9981.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
9. GAPDH ENSGALG00000014442 1156.77 9311.97 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-ND1 MT-ND1 1073.55 8642.05
11. gga-mir-3527 gga-mir-3527 907.11 7302.21
12. MT-ND3 MT-ND3 882.14 7101.20
13. NME2 ENSGALG00000002932 865.50 6967.25 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPS6 ENSGALG00000015082 769.80 6196.87 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
15. MDK ENSGALG00000008367 757.31 6096.33 midkine [Source:NCBI gene;Acc:423196]
16. MT-CO1 MT-CO1 753.15 6062.84
17. RPS23 ENSGALG00000015617 682.41 5493.38 ribosomal protein S23
18. RPL26 RPL26 561.74 4521.99
19. RPL5 ENSGALG00000005922 553.42 4455.02 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
20. CRABP-I ENSGALG00000003193 532.62 4287.58 cellular retinoic acid binding protein 1 [Source:NCBI gene;Acc:374211]
21. RPS7 ENSGALG00000016392 524.29 4220.52 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. RPL7A ENSGALG00000003197 507.65 4086.57 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL8 ENSGALG00000016232 495.17 3986.11 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. EIF4G2 ENSGALG00000005587 453.56 3651.15 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. STMN1 ENSGALG00000001475 432.75 3483.63 stathmin 1 [Source:NCBI gene;Acc:396057]
26. RPL23 ENSGALG00000001634 420.27 3383.16 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. ENSGALG00000002696 ENSGALG00000002696 416.11 3349.67
28. RPL27A ENSGALG00000005948 403.62 3249.13 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPL18A 399.46 3215.64 ribosomal protein L18a
30. ATP6V0C ENSGALG00000009229 391.14 3148.67 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
31. RPS27A ENSGALG00000036790 382.82 3081.69 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
32. RPS4 RPS4 374.50 3014.71
33. RPS20 ENSGALG00000014432 366.17 2947.66 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
34. RPL31 ENSGALG00000016775 357.85 2880.68 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
35. EEF1B2 ENSGALG00000008590 349.53 2813.71 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
36. RPS10 ENSGALG00000002813 349.53 2813.71 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
37. FKBP4 ENSGALG00000014331 337.05 2713.24 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
38. ENSGALG00000018384 ENSGALG00000018384 332.88 2679.67
39. RAN ENSGALG00000002569 332.88 2679.67 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
40. RPL15 ENSGALG00000011290 332.88 2679.67 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
41. RPS3 ENSGALG00000017330 332.88 2679.67 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
42. TCF12 ENSGALG00000004304 332.88 2679.67 transcription factor 12 [Source:NCBI gene;Acc:396334]
43. EIF1 ENSGALG00000028517 324.56 2612.70 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
44. TMSB4X ENSGALG00000026383 324.56 2612.70 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
45. H3-IX H3-IX 320.40 2579.21
46. RPS11 ENSGALG00000017299 316.24 2545.72 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
47. ENO1 ENSGALG00000002377 312.08 2512.24 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
48. RPS29 ENSGALG00000012229 312.08 2512.24 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. LUM ENSGALG00000011271 307.92 2478.75 lumican [Source:NCBI gene;Acc:417891]
50. RPL7 ENSGALG00000035252 303.76 2445.26 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
51. RPL14 ENSGALG00000043379 291.27 2344.72 ribosomal protein L14
52. KPNA2 ENSGALG00000003584 287.11 2311.23 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
53. RPS24 ENSGALG00000004871 282.95 2277.74 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
54. ATP5G3 278.79 2244.25 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
55. LDHB ENSGALG00000035836 278.79 2244.25 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
56. RPS16 ENSGALG00000026490 278.79 2244.25 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. CNN3 ENSGALG00000005597 274.63 2210.76 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
58. SNRPE ENSGALG00000000137 266.31 2143.79 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
59. RPL13 ENSGALG00000006179 253.82 2043.24 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
60. RPS14 ENSGALG00000004588 253.82 2043.24 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. RPS8 ENSGALG00000010124 245.50 1976.27 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
62. SNRPG ENSGALG00000028409 245.50 1976.27 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
63. TXN ENSGALG00000015704 245.50 1976.27 thioredoxin [Source:NCBI gene;Acc:396437]
64. HNRNPDL ENSGALG00000023199 241.34 1942.78 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
65. RPL37 ENSGALG00000014833 241.34 1942.78 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
66. RPSA 241.34 1942.78 ribosomal protein SA
67. CIRBP ENSGALG00000030918 237.18 1909.29 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
68. ENSGALG00000028992 ENSGALG00000028992 237.18 1909.29
69. HMGN5 ENSGALG00000007131 237.18 1909.29 high mobility group nucleosome binding domain 5, transcript variant X1
70. CRHOA CRHOA 233.02 1875.80
71. KRT19 ENSGALG00000019719 233.02 1875.80 keratin 19 [Source:NCBI gene;Acc:395861]
72. RPL32 ENSGALG00000027142 233.02 1875.80 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
73. HMGN2 HMGN2 228.86 1842.32
74. RPL21 ENSGALG00000027035 228.86 1842.32 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
75. EIF5A2 ENSGALG00000009309 224.70 1808.83 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
76. RPL35A ENSGALG00000007611, ENSGALG00000041230 224.70 1808.83 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
77. RPL36 ENSGALG00000000474 224.70 1808.83 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
78. RPL38 ENSGALG00000001465 224.70 1808.83 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. TPT1 ENSGALG00000028872 224.70 1808.83 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
80. RPS12 ENSGALG00000013990 220.54 1775.34 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
81. HBG1 HBG1 216.38 1741.85
82. RPL27 ENSGALG00000002837 216.38 1741.85 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
83. RPL4 ENSGALG00000007711 216.38 1741.85 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
84. RPLP2 ENSGALG00000034811 216.38 1741.85 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
85. HNRNPA3 ENSGALG00000009250 212.21 1708.28 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
86. SLC25A6_1 ENSGALG00000016691 212.21 1708.28 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
87. H2AFZ ENSGALG00000014023 208.05 1674.80 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
88. IGF2BP3 ENSGALG00000010961 208.05 1674.80 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
89. RPL29 ENSGALG00000026978 203.89 1641.31 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
90. RPLP1 ENSGALG00000030878 203.89 1641.31 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
91. EIF4A2 ENSGALG00000008684 195.57 1574.33 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
92. RPL6 ENSGALG00000004818 195.57 1574.33 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
93. RPS15A ENSGALG00000006771 195.57 1574.33 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
94. NDUFB9 ENSGALG00000042242 191.41 1540.85 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
95. RPL23A ENSGALG00000003966 191.41 1540.85 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
96. ANP32B ENSGALG00000037483 187.25 1507.36 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. EEF1D 187.25 1507.36 eukaryotic translation elongation factor 1 delta, transcript variant X13
98. YWHAZ ENSGALG00000031387 187.25 1507.36 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
99. MT-ND2 MT-ND2 183.09 1473.87
100. RPL12 ENSGALG00000008806 183.09 1473.87 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA