Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_1, section s3.

Sample reads: 124,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6895.92 55504.46
2. MT-ATP6 MT-ATP6 3116.69 25085.88
3. MT-CYB MT-CYB 1778.29 14313.25
4. RPLP1 ENSGALG00000030878 1542.83 12418.06 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
5. TMSB4X ENSGALG00000026383 1339.38 10780.51 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
6. EEF1A EEF1A 1138.40 9162.85
7. RPS10 ENSGALG00000002813 1012.79 8151.83 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPS3A ENSGALG00000010077 976.34 7858.45 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
9. MT-ND5 MT-ND5 957.12 7703.75
10. MT-ND6 MT-ND6 924.61 7442.08
11. MT-CO1 MT-CO1 918.21 7390.57
12. RPS29 ENSGALG00000012229 893.09 7188.38 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
13. MT-ND4 MT-ND4 862.54 6942.48
14. gga-mir-3527 gga-mir-3527 861.07 6930.65
15. RPS8 ENSGALG00000010124 822.64 6621.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. RPS12 ENSGALG00000013990 773.38 6224.85 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. GAPDH ENSGALG00000014442 729.05 5868.04 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
18. RPL35A ENSGALG00000007611, ENSGALG00000041230 716.73 5768.88 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
19. RPL15 ENSGALG00000011290 711.32 5725.33 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. RPL6 ENSGALG00000004818 654.67 5269.36 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
21. RPL38 ENSGALG00000001465 653.68 5261.39 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
22. ENSGALG00000018384 ENSGALG00000018384 646.79 5205.94
23. RPLP0 ENSGALG00000023294 632.01 5086.98 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
24. RPL14 ENSGALG00000043379 597.53 4809.45 ribosomal protein L14
25. RPL18A 579.79 4666.66 ribosomal protein L18a
26. RPL8 ENSGALG00000016232 561.07 4515.99 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
27. RPL23 ENSGALG00000001634 551.71 4440.65 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
28. RPL27 ENSGALG00000002837 550.24 4428.82 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
29. RPL36AL ENSGALG00000004952 532.50 4286.03 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
30. RPL23A ENSGALG00000003966 524.13 4218.66 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
31. RPLP2 ENSGALG00000034811 520.19 4186.95 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
32. RPL29 ENSGALG00000026978 517.72 4167.07 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
33. gga-mir-3533 ENSGALG00000027736 492.60 3964.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
34. RPL26 RPL26 489.15 3937.11
35. RPL19 ENSGALG00000001658 486.69 3917.31 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
36. RPS21 ENSGALG00000005338 481.27 3873.69 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. MT-ND1 MT-ND1 475.85 3830.06
38. RPL4 ENSGALG00000007711 458.61 3691.30 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
39. RPL32 ENSGALG00000027142 457.13 3679.39 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL7A ENSGALG00000003197 456.64 3675.44 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
41. RPS15A ENSGALG00000006771 448.27 3608.07 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPL13 ENSGALG00000006179 432.50 3481.14 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
43. MARCKSL1 ENSGALG00000032335 419.20 3374.09 MARCKS like 1 [Source:NCBI gene;Acc:770764]
44. RPL35 ENSGALG00000035677 416.25 3350.35 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
45. RPS4 RPS4 416.25 3350.35
46. RPL27A ENSGALG00000005948 414.77 3338.44 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
47. RPS14 ENSGALG00000004588 404.92 3259.15 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
48. RPS15 ENSGALG00000015195 398.02 3203.62 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
49. RPS23 ENSGALG00000015617 388.17 3124.34 ribosomal protein S23
50. RPS7 ENSGALG00000016392 387.68 3120.39 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
51. PPIA ENSGALG00000028600 382.26 3076.77 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
52. ATP5G3 379.30 3052.94 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
53. RPS11 ENSGALG00000017299 378.32 3045.05 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
54. RPS13 ENSGALG00000006096 369.94 2977.60 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
55. RAN ENSGALG00000002569 368.96 2969.72 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
56. RPL37 ENSGALG00000014833 366.00 2945.89 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
57. MT-ND3 MT-ND3 361.57 2910.23
58. ENSGALG00000028649 ENSGALG00000028649 355.17 2858.72
59. RPL21 ENSGALG00000027035 351.72 2830.95 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
60. RPS25 ENSGALG00000007699 347.78 2799.24 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
61. RPSA 338.42 2723.90 ribosomal protein SA
62. TCEB3 ENSGALG00000034625 335.46 2700.08 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
63. RPL31 ENSGALG00000016775 326.10 2624.74 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
64. NME2 ENSGALG00000002932 322.65 2596.97 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. MIF ENSGALG00000006326 321.67 2589.08 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
66. HMGB2 ENSGALG00000010745 321.18 2585.14 high mobility group box 2 [Source:NCBI gene;Acc:396482]
67. RPL24 ENSGALG00000015339 316.25 2545.46 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
68. RPS20 ENSGALG00000014432 308.37 2482.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
69. CIRBP ENSGALG00000030918 306.89 2470.12 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
70. RPL12 ENSGALG00000008806 305.91 2462.23 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
71. RPS16 ENSGALG00000026490 297.04 2390.84 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
72. ENO1 ENSGALG00000002377 289.16 2327.42 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
73. HMGN5 ENSGALG00000007131 287.19 2311.56 high mobility group nucleosome binding domain 5, transcript variant X1
74. RPS6 ENSGALG00000015082 281.77 2267.93 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
75. RPS24 ENSGALG00000004871 279.80 2252.08 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
76. RPS27A ENSGALG00000036790 276.35 2224.31 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
77. RPS2 ENSGALG00000005490 273.89 2204.51 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
78. HSPA8 ENSGALG00000006512 269.45 2168.77 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
79. RPL5 ENSGALG00000005922 266.50 2145.03 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
80. SNRPD1 ENSGALG00000041334 266.50 2145.03 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
81. SNRPG ENSGALG00000028409 263.54 2121.20 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
82. LDHB ENSGALG00000035836 263.05 2117.26 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. HMGN2 HMGN2 259.60 2089.49
84. ANP32B ENSGALG00000037483 252.70 2033.95 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. MT-ND2 MT-ND2 252.21 2030.01
86. STMN1 ENSGALG00000001475 249.75 2010.21 stathmin 1 [Source:NCBI gene;Acc:396057]
87. ENSGALG00000018386 ENSGALG00000018386 241.37 1942.76
88. ENSGALG00000028992 ENSGALG00000028992 241.37 1942.76
89. SHFM1 SHFM1 236.94 1907.10
90. ENSGALG00000002696 ENSGALG00000002696 231.52 1863.48
91. RPL7 ENSGALG00000035252 227.58 1831.76 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
92. RPL10A ENSGALG00000002644 227.09 1827.82 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
93. TXN ENSGALG00000015704 212.80 1712.80 thioredoxin [Source:NCBI gene;Acc:396437]
94. SET ENSGALG00000004701 207.88 1673.20 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
95. GNB2L1 ENSGALG00000000122 206.89 1665.23 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
96. ACTG1_1 ENSGALG00000001381 204.43 1645.43 Actin, gamma 1 [Source:NCBI gene;Acc:415296]
97. SEC61G ENSGALG00000037863 204.43 1645.43 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
98. RPS3 ENSGALG00000017330 203.44 1637.46 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
99. NCL ENSGALG00000032930 202.46 1629.58 nucleolin [Source:NCBI gene;Acc:396201]
100. HSP90AB1 ENSGALG00000010175 200.00 1609.78 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA