Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s84.

Sample reads: 113,500. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4093.43 36067.21
2. EEF1A EEF1A 1270.89 11197.81
3. MT-ATP6 MT-ATP6 1164.90 10263.93
4. MT-ND5 MT-ND5 1139.80 10042.78
5. CIRBP ENSGALG00000030918 1028.24 9059.82 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
6. gga-mir-3533 ENSGALG00000027736 1001.28 8822.28 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MDK ENSGALG00000008367 954.79 8412.65 midkine [Source:NCBI gene;Acc:423196]
8. RPLP0 ENSGALG00000023294 842.30 7421.51 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
9. RPL35A ENSGALG00000007611, ENSGALG00000041230 826.50 7282.29 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
10. GAPDH ENSGALG00000014442 777.22 6848.09 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPS10 ENSGALG00000002813 745.61 6569.57 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. RPLP1 ENSGALG00000030878 714.93 6299.25 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
13. RPL4 ENSGALG00000007711 710.28 6258.28 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPL23A ENSGALG00000003966 696.34 6135.45 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
15. RPL15 ENSGALG00000011290 665.66 5865.13 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
16. RPS23 ENSGALG00000015617 573.62 5054.17 ribosomal protein S23
17. MT-ND4 MT-ND4 557.82 4914.95
18. MT-CYB MT-CYB 551.31 4857.59
19. SNRPD1 ENSGALG00000041334 532.71 4693.71 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
20. RPSA 523.42 4611.85 ribosomal protein SA
21. PPIA ENSGALG00000028600 500.17 4407.00 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
22. RPL8 ENSGALG00000016232 497.39 4382.50 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
23. RPL27A ENSGALG00000005948 489.95 4316.95 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPS21 ENSGALG00000005338 484.37 4267.78 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
25. RPS11 ENSGALG00000017299 461.13 4063.02 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
26. RPS6 ENSGALG00000015082 460.20 4054.82 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
27. RPL13 ENSGALG00000006179 457.41 4030.24 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
28. RPL7A ENSGALG00000003197 449.97 3964.69 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
29. RPS8 ENSGALG00000010124 446.25 3931.91 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
30. RPL19 ENSGALG00000001658 437.88 3858.16 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPS2 ENSGALG00000005490 429.52 3784.50 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
32. RPS12 ENSGALG00000013990 421.15 3710.75 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
33. RPL35 ENSGALG00000035677 417.43 3677.98 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
34. GNB2L1 ENSGALG00000000122 404.42 3563.34 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
35. RPL38 ENSGALG00000001465 396.98 3497.79 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
36. RPS29 ENSGALG00000012229 396.98 3497.79 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
37. RPL29 ENSGALG00000026978 390.47 3440.43 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
38. RPS3A ENSGALG00000010077 388.61 3424.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
39. RPL26 RPL26 387.68 3415.85
40. RPL37 ENSGALG00000014833 386.75 3407.65 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
41. RPS15 ENSGALG00000015195 382.10 3366.68 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
42. RPL27 ENSGALG00000002837 381.17 3358.49 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
43. RPL32 ENSGALG00000027142 381.17 3358.49 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
44. RPS4 RPS4 380.24 3350.29
45. HMGN5 ENSGALG00000007131 375.60 3309.41 high mobility group nucleosome binding domain 5, transcript variant X1
46. gga-mir-3527 gga-mir-3527 369.09 3252.05
47. RPL14 ENSGALG00000043379 360.72 3178.30 ribosomal protein L14
48. RPL12 ENSGALG00000008806 359.79 3170.11 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
49. RPS15A ENSGALG00000006771 357.00 3145.53 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. NME2 ENSGALG00000002932 353.28 3112.75 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
51. RPS16 ENSGALG00000026490 332.83 2932.57 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
52. RPS27A ENSGALG00000036790 330.97 2916.18 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. RPS28 ENSGALG00000024398 329.11 2899.79 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
54. TXN ENSGALG00000015704 315.17 2776.96 thioredoxin [Source:NCBI gene;Acc:396437]
55. RPL21 ENSGALG00000027035 313.31 2760.57 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
56. RPL36 ENSGALG00000000474 313.31 2760.57 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
57. RPL37A ENSGALG00000011472 313.31 2760.57 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
58. PHB2 ENSGALG00000014567 311.45 2744.19 prohibitin 2 [Source:NCBI gene;Acc:771124]
59. MT-CO1 MT-CO1 309.59 2727.80
60. RPL6 ENSGALG00000004818 303.08 2670.44 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. EIF5A2 ENSGALG00000009309 294.71 2596.69 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
62. ENSGALG00000028649 ENSGALG00000028649 293.78 2588.50
63. RPL23 ENSGALG00000001634 293.78 2588.50 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
64. ANP32B ENSGALG00000037483 292.85 2580.30 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
65. RPS14 ENSGALG00000004588 290.99 2563.91 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. ALDOC ENSGALG00000026077 289.13 2547.52 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
67. RPL24 ENSGALG00000015339 279.84 2465.67 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
68. RPS7 ENSGALG00000016392 275.19 2424.70 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
69. MT-ND1 MT-ND1 264.96 2334.56
70. ENO1 ENSGALG00000002377 263.10 2318.17 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. RPL18A 258.45 2277.20 ribosomal protein L18a
72. RPL36AL ENSGALG00000004952 257.52 2269.01 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
73. SET ENSGALG00000004701 253.81 2236.32 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
74. ENSGALG00000002696 ENSGALG00000002696 244.51 2154.38
75. STMN1 ENSGALG00000001475 242.65 2137.99 stathmin 1 [Source:NCBI gene;Acc:396057]
76. ENSGALG00000018384 ENSGALG00000018384 241.72 2129.79
77. MT-ND3 MT-ND3 238.00 2097.02
78. H3-IX H3-IX 237.07 2088.82
79. RPLP2 ENSGALG00000034811 232.42 2047.85 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
80. RPL5 ENSGALG00000005922 231.49 2039.66 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
81. HMGN2 HMGN2 229.63 2023.27
82. RPS20 ENSGALG00000014432 225.92 1990.58 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
83. EEF1D 224.06 1974.19 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. TMSB4X ENSGALG00000026383 224.06 1974.19 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
85. TCEB3 ENSGALG00000034625 222.20 1957.80 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
86. RPS25 ENSGALG00000007699 216.62 1908.64 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
87. FKBP4 ENSGALG00000014331 213.83 1884.06 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
88. UBB ENSGALG00000004509 213.83 1884.06 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
89. RAN ENSGALG00000002569 212.90 1875.86 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
90. ATP5G3 211.04 1859.47 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. RPS13 ENSGALG00000006096 205.46 1810.31 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
92. PRDX1 ENSGALG00000010243 204.53 1802.11 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
93. RPL7 ENSGALG00000035252 200.81 1769.34 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
94. CRHOA CRHOA 199.88 1761.14
95. ENSGALG00000028992 ENSGALG00000028992 196.16 1728.37
96. LDHB ENSGALG00000035836 194.31 1712.07 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
97. RPL31 ENSGALG00000016775 192.45 1695.68 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
98. EIF4G2 ENSGALG00000005587 191.52 1687.48 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
99. HSPA8 ENSGALG00000006512 189.66 1671.09 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
100. CCT4 ENSGALG00000008812 187.80 1654.71 chaperonin containing TCP1 subunit 4 [Source:NCBI gene;Acc:395414]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA