Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s33.

Sample reads: 113,658. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4200.29 36956.27
2. EEF1A EEF1A 1438.22 12654.19
3. CIRBP ENSGALG00000030918 1194.46 10509.46 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. RPLP0 ENSGALG00000023294 1170.08 10294.95 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
5. MT-ATP6 MT-ATP6 1130.70 9948.47
6. gga-mir-3533 ENSGALG00000027736 1081.95 9519.54 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. MT-ND5 MT-ND5 941.31 8282.12
8. RPL15 ENSGALG00000011290 886.94 7803.75 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
9. RPS10 ENSGALG00000002813 862.56 7589.24 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
10. GAPDH ENSGALG00000014442 838.18 7374.73 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPL23A ENSGALG00000003966 750.05 6599.32 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. RPL35A ENSGALG00000007611, ENSGALG00000041230 727.55 6401.35 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
13. RPS23 ENSGALG00000015617 716.30 6302.37 ribosomal protein S23
14. RPL4 ENSGALG00000007711 699.42 6153.85 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
15. PPIA ENSGALG00000028600 693.80 6104.40 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPLP1 ENSGALG00000030878 633.79 5576.40 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
17. RPL13 ENSGALG00000006179 613.17 5394.98 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
18. SNRPD1 ENSGALG00000041334 577.54 5081.49 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
19. RPL35 ENSGALG00000035677 547.54 4817.53 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
20. MT-CYB MT-CYB 526.91 4636.02
21. RPS15 ENSGALG00000015195 521.29 4586.57 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
22. RPS2 ENSGALG00000005490 498.78 4388.52 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
23. RPS29 ENSGALG00000012229 496.91 4372.07 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
24. RPL29 ENSGALG00000026978 493.16 4339.07 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
25. RPSA 491.28 4322.53 ribosomal protein SA
26. HBG1 HBG1 485.66 4273.08
27. MT-ND4 MT-ND4 480.03 4223.55
28. RPS21 ENSGALG00000005338 480.03 4223.55 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
29. HBZ ENSGALG00000023740 476.28 4190.55 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
30. RPS11 ENSGALG00000017299 476.28 4190.55 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
31. RPL27A ENSGALG00000005948 470.66 4141.10 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPL19 ENSGALG00000001658 453.78 3992.59 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
33. RPL27 ENSGALG00000002837 450.03 3959.59 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
34. GNB2L1 ENSGALG00000000122 442.53 3893.60 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
35. RPL32 ENSGALG00000027142 442.53 3893.60 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
36. gga-mir-3527 gga-mir-3527 429.40 3778.08
37. RPS4 RPS4 420.03 3695.64
38. RPL38 ENSGALG00000001465 414.40 3646.10 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
39. RPL7A ENSGALG00000003197 412.53 3629.65 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPS15A ENSGALG00000006771 408.78 3596.65 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
41. RPS8 ENSGALG00000010124 405.03 3563.66 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
42. RPL36 ENSGALG00000000474 403.15 3547.12 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
43. TXN ENSGALG00000015704 399.40 3514.12 thioredoxin [Source:NCBI gene;Acc:396437]
44. RPS12 ENSGALG00000013990 388.15 3415.14 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
45. RPL37 ENSGALG00000014833 378.78 3332.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
46. RPL12 ENSGALG00000008806 376.90 3316.16 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. RPS3A ENSGALG00000010077 376.90 3316.16 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
48. RPL6 ENSGALG00000004818 365.65 3217.17 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. RPS27A ENSGALG00000036790 365.65 3217.17 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
50. MDK ENSGALG00000008367 360.02 3167.64 midkine [Source:NCBI gene;Acc:423196]
51. RPS28 ENSGALG00000024398 352.52 3101.65 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
52. RPL21 ENSGALG00000027035 343.15 3019.21 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. RPL8 ENSGALG00000016232 341.27 3002.67 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
54. HBE 339.40 2986.21 hemoglobin subunit epsilon
55. NME2 ENSGALG00000002932 337.52 2969.67 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPL37A ENSGALG00000011472 335.65 2953.22 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
57. RPS6 ENSGALG00000015082 333.77 2936.68 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
58. MT-CO1 MT-CO1 328.15 2887.23
59. TCEB3 ENSGALG00000034625 324.40 2854.24 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
60. MT-ND1 MT-ND1 322.52 2837.69
61. RPL23 ENSGALG00000001634 320.65 2821.24 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
62. ENO1 ENSGALG00000002377 315.02 2771.71 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
63. RPL26 RPL26 313.15 2755.25
64. ATP5G3 311.27 2738.71 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
65. ALDOC ENSGALG00000026077 309.40 2722.26 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
66. RPS16 ENSGALG00000026490 301.90 2656.27 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
67. MT-ND3 MT-ND3 290.65 2557.29
68. RPS14 ENSGALG00000004588 288.77 2540.74 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
69. RPL24 ENSGALG00000015339 285.02 2507.75 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
70. ANP32B ENSGALG00000037483 283.14 2491.21 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
71. HMGN2 HMGN2 283.14 2491.21
72. RPL18A 283.14 2491.21 ribosomal protein L18a
73. RPS7 ENSGALG00000016392 281.27 2474.76 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
74. RPL14 ENSGALG00000043379 279.39 2458.21 ribosomal protein L14
75. ENSGALG00000028649 ENSGALG00000028649 275.64 2425.22
76. PRDX1 ENSGALG00000010243 271.89 2392.23 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
77. LDHB ENSGALG00000035836 268.14 2359.23 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
78. RPL7 ENSGALG00000035252 258.77 2276.79 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
79. RPL5 ENSGALG00000005922 255.02 2243.79 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
80. RPS13 ENSGALG00000006096 249.39 2194.26 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
81. RPL36AL ENSGALG00000004952 247.52 2177.81 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. STMN1 ENSGALG00000001475 247.52 2177.81 stathmin 1 [Source:NCBI gene;Acc:396057]
83. TMSB4X ENSGALG00000026383 236.27 2078.82 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
84. HMGN5 ENSGALG00000007131 234.39 2062.28 high mobility group nucleosome binding domain 5, transcript variant X1
85. EEF1D 232.52 2045.83 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. EIF5A2 ENSGALG00000009309 232.52 2045.83 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
87. CRHOA CRHOA 223.14 1963.30
88. H3-IX H3-IX 219.39 1930.30
89. RPS17 ENSGALG00000002157 219.39 1930.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
90. EIF4G2 ENSGALG00000005587 213.76 1880.77 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
91. RPS20 ENSGALG00000014432 211.89 1864.32 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
92. SLC25A6_1 ENSGALG00000016691 211.89 1864.32 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
93. RAN ENSGALG00000002569 210.01 1847.77 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
94. RPL31 ENSGALG00000016775 210.01 1847.77 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
95. HNRNPDL ENSGALG00000023199 208.14 1831.32 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. UBB ENSGALG00000004509 206.26 1814.78 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
97. PHB2 ENSGALG00000014567 202.51 1781.79 prohibitin 2 [Source:NCBI gene;Acc:771124]
98. SEC61G ENSGALG00000037863 198.76 1748.79 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
99. RPS25 ENSGALG00000007699 196.89 1732.34 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
100. ENSGALG00000022570 ENSGALG00000022570 191.26 1682.80
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA