Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_embryo, section s29.

Sample reads: 113,613. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4316.40 37994.20
2. EEF1A EEF1A 1319.40 11613.74
3. CIRBP ENSGALG00000030918 1155.09 10167.44 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
4. MT-ATP6 MT-ATP6 1079.51 9502.16
5. RPLP0 ENSGALG00000023294 1031.86 9082.73 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
6. gga-mir-3533 ENSGALG00000027736 952.99 8388.49 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPL15 ENSGALG00000011290 934.92 8229.44 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 837.98 7376.14 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPLP1 ENSGALG00000030878 780.47 6869.92 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
10. RPS10 ENSGALG00000002813 759.11 6681.91 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPL23A ENSGALG00000003966 757.46 6667.38 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
12. GAPDH ENSGALG00000014442 741.03 6522.76 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. MT-ND5 MT-ND5 718.03 6320.31
14. RPS23 ENSGALG00000015617 706.53 6219.08 ribosomal protein S23
15. RPL4 ENSGALG00000007711 696.67 6132.29 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
16. RPL13 ENSGALG00000006179 693.38 6103.33 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
17. RPS15 ENSGALG00000015195 619.44 5452.49 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
18. RPL35 ENSGALG00000035677 596.44 5250.04 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
19. PPIA ENSGALG00000028600 584.94 5148.81 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPL27A ENSGALG00000005948 568.51 5004.19 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. SNRPD1 ENSGALG00000041334 568.51 5004.19 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
22. RPS11 ENSGALG00000017299 553.72 4874.00 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
23. RPS2 ENSGALG00000005490 524.15 4613.72 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
24. RPS12 ENSGALG00000013990 511.00 4497.97 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
25. RPL29 ENSGALG00000026978 509.36 4483.53 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
26. RPL19 ENSGALG00000001658 494.57 4353.35 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPSA 488.00 4295.52 ribosomal protein SA
28. RPS3A ENSGALG00000010077 474.85 4179.77 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
29. RPS8 ENSGALG00000010124 474.85 4179.77 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
30. RPS29 ENSGALG00000012229 473.21 4165.33 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPS15A ENSGALG00000006771 466.64 4107.50 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
32. RPS21 ENSGALG00000005338 458.42 4035.15 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
33. HBG1 HBG1 450.21 3962.88
34. RPL38 ENSGALG00000001465 450.21 3962.88 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
35. MT-ND4 MT-ND4 437.06 3847.13
36. RPL7A ENSGALG00000003197 437.06 3847.13 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
37. RPS27A ENSGALG00000036790 435.42 3832.69 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
38. MT-CYB MT-CYB 422.27 3716.94
39. RPL32 ENSGALG00000027142 420.63 3702.51 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
40. RPL8 ENSGALG00000016232 405.84 3572.32 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
41. MDK ENSGALG00000008367 402.56 3543.45 midkine [Source:NCBI gene;Acc:423196]
42. GNB2L1 ENSGALG00000000122 400.91 3528.93 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
43. RPL12 ENSGALG00000008806 391.06 3442.22 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. TXN ENSGALG00000015704 391.06 3442.22 thioredoxin [Source:NCBI gene;Acc:396437]
45. TCEB3 ENSGALG00000034625 386.13 3398.83 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
46. RPL6 ENSGALG00000004818 377.91 3326.47 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
47. HBZ ENSGALG00000023740 364.77 3210.81 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
48. RPS16 ENSGALG00000026490 361.48 3181.85 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
49. NME2 ENSGALG00000002932 354.91 3124.02 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
50. RPL26 RPL26 351.62 3095.06
51. RPS6 ENSGALG00000015082 349.98 3080.63 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
52. RPL36 ENSGALG00000000474 348.33 3066.10 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
53. RPS28 ENSGALG00000024398 346.69 3051.67 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
54. RPL27 ENSGALG00000002837 345.05 3037.23 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. gga-mir-3527 gga-mir-3527 341.76 3008.27
56. RPL24 ENSGALG00000015339 336.83 2964.88 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
57. RPL37 ENSGALG00000014833 335.19 2950.44 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
58. RPL37A ENSGALG00000011472 330.26 2907.04 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
59. RPS4 RPS4 326.97 2878.08
60. LDHB ENSGALG00000035836 320.40 2820.25 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
61. RPL23 ENSGALG00000001634 318.76 2805.82 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
62. RPL14 ENSGALG00000043379 312.19 2747.99 ribosomal protein L14
63. EIF5A2 ENSGALG00000009309 289.18 2545.45 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
64. RPS14 ENSGALG00000004588 289.18 2545.45 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
65. ATP5G3 282.61 2487.61 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
66. PRDX1 ENSGALG00000010243 280.97 2473.18 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
67. RPS13 ENSGALG00000006096 272.75 2400.82 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
68. ALDOC ENSGALG00000026077 269.47 2371.95 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
69. RPL31 ENSGALG00000016775 264.54 2328.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
70. CRHOA CRHOA 261.25 2299.60
71. ENO1 ENSGALG00000002377 259.61 2285.16 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
72. HBE 257.97 2270.73 hemoglobin subunit epsilon
73. RPS20 ENSGALG00000014432 256.32 2256.20 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
74. STMN1 ENSGALG00000001475 256.32 2256.20 stathmin 1 [Source:NCBI gene;Acc:396057]
75. ENSGALG00000028649 ENSGALG00000028649 254.68 2241.77
76. MT-ND3 MT-ND3 253.04 2227.33
77. RPL5 ENSGALG00000005922 253.04 2227.33 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
78. H3-IX H3-IX 244.82 2154.98
79. RPL21 ENSGALG00000027035 243.18 2140.54 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
80. MT-CO1 MT-CO1 241.53 2126.02
81. HMGN2 HMGN2 239.89 2111.58
82. RPL7 ENSGALG00000035252 239.89 2111.58 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
83. ANP32B ENSGALG00000037483 238.25 2097.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
84. MT-ND1 MT-ND1 231.68 2039.31
85. HMGN5 ENSGALG00000007131 228.39 2010.35 high mobility group nucleosome binding domain 5, transcript variant X1
86. RPS7 ENSGALG00000016392 228.39 2010.35 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
87. RPL18A 226.75 1995.92 ribosomal protein L18a
88. TMSB4X ENSGALG00000026383 223.46 1966.96 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
89. EIF4G2 ENSGALG00000005587 221.82 1952.52 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
90. EEF1D 216.89 1909.13 eukaryotic translation elongation factor 1 delta, transcript variant X13
91. ENSGALG00000002696 ENSGALG00000002696 216.89 1909.13
92. HNRNPDL ENSGALG00000023199 216.89 1909.13 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. SLC25A6_1 ENSGALG00000016691 213.60 1880.17 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
94. FKBP4 ENSGALG00000014331 210.32 1851.30 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
95. ENSGALG00000028992 ENSGALG00000028992 208.67 1836.77
96. GPC4 ENSGALG00000006080 198.81 1749.98 glypican 4 [Source:HGNC Symbol;Acc:HGNC:4452]
97. RPL36AL ENSGALG00000004952 198.81 1749.98 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
98. SET ENSGALG00000004701 198.81 1749.98 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
99. RPLP2 ENSGALG00000034811 197.17 1735.55 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
100. PHB2 ENSGALG00000014567 193.88 1706.59 prohibitin 2 [Source:NCBI gene;Acc:771124]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA