Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s20.

Sample reads: 235,503. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5327.00 22622.36
2. RPLP0 ENSGALG00000023294 3503.00 14876.31 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 2629.00 11164.67 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. gga-mir-3533 ENSGALG00000027736 2509.00 10655.06 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. RPS10 ENSGALG00000002813 2445.00 10383.27 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. EEF1A EEF1A 2280.00 9682.56
7. RPS15 ENSGALG00000015195 2275.00 9661.32 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
8. GAPDH ENSGALG00000014442 2223.00 9440.49 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
9. RPL4 ENSGALG00000007711 2196.00 9325.83 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
10. RPS29 ENSGALG00000012229 2156.00 9155.96 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
11. gga-mir-3527 gga-mir-3527 2033.00 8633.61
12. RPL13 ENSGALG00000006179 1864.00 7915.91 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
13. RPL23A ENSGALG00000003966 1835.00 7792.76 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
14. RPS4 RPS4 1741.00 7393.57
15. RPS2 ENSGALG00000005490 1737.00 7376.58 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
16. PPIA ENSGALG00000028600 1540.00 6539.97 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. MT-ATP6 MT-ATP6 1520.00 6455.04
18. RPSA 1519.00 6450.79 ribosomal protein SA
19. HBZ ENSGALG00000023740 1511.00 6416.82 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
20. MT-ND3 MT-ND3 1459.00 6195.99
21. RPL15 ENSGALG00000011290 1423.00 6043.10 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS8 ENSGALG00000010124 1416.00 6013.38 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
23. RPL19 ENSGALG00000001658 1334.00 5665.14 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. MT-ND5 MT-ND5 1307.00 5550.48
25. RPL35 ENSGALG00000035677 1300.00 5520.76 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
26. RPS14 ENSGALG00000004588 1281.00 5440.07 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
27. RPS28 ENSGALG00000024398 1274.00 5410.34 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
28. MT-ND1 MT-ND1 1242.00 5274.45
29. RPL24 ENSGALG00000015339 1189.00 5049.37 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
30. RPLP1 ENSGALG00000030878 1186.00 5036.63 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
31. RPS21 ENSGALG00000005338 1168.00 4960.19 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
32. RPL18A 1167.00 4955.94 ribosomal protein L18a
33. RPS15A ENSGALG00000006771 1122.00 4764.84 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
34. RPL7A ENSGALG00000003197 1121.00 4760.59 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPL6 ENSGALG00000004818 1065.00 4522.77 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
36. RPL27 ENSGALG00000002837 1062.00 4510.03 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
37. RPL32 ENSGALG00000027142 1058.00 4493.05 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
38. SNRPD1 ENSGALG00000041334 1057.00 4488.80 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
39. RPL27A ENSGALG00000005948 1056.00 4484.55 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
40. RPL29 ENSGALG00000026978 1019.00 4327.42 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. HBG1 HBG1 1015.00 4310.44
42. MT-ND4 MT-ND4 961.00 4081.11
43. RPL12 ENSGALG00000008806 955.00 4055.63 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
44. RPL7 ENSGALG00000035252 919.00 3902.75 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
45. GNB2L1 ENSGALG00000000122 913.00 3877.27 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
46. RPL26 RPL26 876.00 3720.14
47. RPS23 ENSGALG00000015617 872.00 3703.15 ribosomal protein S23
48. RPS11 ENSGALG00000017299 862.00 3660.69 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPS3A ENSGALG00000010077 862.00 3660.69 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
50. RPS16 ENSGALG00000026490 852.00 3618.22 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
51. RPL36 ENSGALG00000000474 851.00 3613.97 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
52. RPL38 ENSGALG00000001465 833.00 3537.53 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
53. NME2 ENSGALG00000002932 824.00 3499.31 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
54. RPS27A ENSGALG00000036790 820.00 3482.32 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. HBE 818.00 3473.83 hemoglobin subunit epsilon
56. RPS7 ENSGALG00000016392 815.00 3461.09 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. ANP32B ENSGALG00000037483 795.00 3376.15 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
58. CIRBP ENSGALG00000030918 786.00 3337.93 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
59. ENO1 ENSGALG00000002377 766.00 3253.00 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
60. RPS12 ENSGALG00000013990 758.00 3219.03 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
61. TCEB3 ENSGALG00000034625 752.00 3193.54 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
62. RPL14 ENSGALG00000043379 736.00 3125.60 ribosomal protein L14
63. RPL8 ENSGALG00000016232 723.00 3070.39 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
64. RPL5 ENSGALG00000005922 719.00 3053.40 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. RPL36AL ENSGALG00000004952 707.00 3002.44 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
66. RPL21 ENSGALG00000027035 694.00 2947.23 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
67. MT-CYB MT-CYB 689.00 2926.00
68. LDHB ENSGALG00000035836 658.00 2794.35 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
69. ALDOC ENSGALG00000026077 652.00 2768.87 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
70. RPL37A ENSGALG00000011472 643.00 2730.65 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
71. RPS25 ENSGALG00000007699 642.00 2726.40 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
72. RPL23 ENSGALG00000001634 623.00 2645.72 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
73. TMSB4X ENSGALG00000026383 613.00 2603.25 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
74. RPS13 ENSGALG00000006096 611.00 2594.76 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
75. MT-CO1 MT-CO1 609.00 2586.26
76. RPS24 ENSGALG00000004871 609.00 2586.26 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
77. RPS3 ENSGALG00000017330 584.00 2480.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
78. RPS17 ENSGALG00000002157 575.00 2441.87 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
79. EIF5A2 ENSGALG00000009309 574.00 2437.63 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
80. HMGN2 HMGN2 571.00 2424.89
81. PRDX1 ENSGALG00000010243 570.00 2420.64 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. UBB ENSGALG00000004509 566.00 2403.65 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
83. FTH FTH 539.00 2288.99
84. EEF1D 528.00 2242.28 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. ENSGALG00000018384 ENSGALG00000018384 528.00 2242.28
86. MDK ENSGALG00000008367 515.00 2187.07 midkine [Source:NCBI gene;Acc:423196]
87. RPL10A ENSGALG00000002644 508.00 2157.34 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
88. STMN1 ENSGALG00000001475 500.00 2123.37 stathmin 1 [Source:NCBI gene;Acc:396057]
89. MT-ND6 MT-ND6 486.00 2063.91
90. ATP5G3 484.00 2055.42 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
91. PKM ENSGALG00000001992 469.00 1991.72 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
92. RPS20 ENSGALG00000014432 469.00 1991.72 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
93. ENSGALG00000028992 ENSGALG00000028992 465.00 1974.73
94. ENSGALG00000028649 ENSGALG00000028649 434.00 1843.08
95. CRHOA CRHOA 421.00 1787.88
96. RPL31 ENSGALG00000016775 400.00 1698.69 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
97. RPS6 ENSGALG00000015082 400.00 1698.69 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
98. HMGN5 ENSGALG00000007131 389.00 1651.98 high mobility group nucleosome binding domain 5, transcript variant X1
99. ZNF593 ENSGALG00000000542 388.00 1647.73 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
100. RAN ENSGALG00000002569 384.00 1630.75 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA