Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_aorta, section s15.

Sample reads: 235,923. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5152.00 21840.78
2. RPLP0 ENSGALG00000023294 4383.00 18580.77 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
3. EEF1A EEF1A 2523.00 10695.71
4. RPL35A ENSGALG00000007611, ENSGALG00000041230 2471.00 10475.27 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
5. RPS10 ENSGALG00000002813 2444.00 10360.81 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
6. GAPDH ENSGALG00000014442 2318.00 9826.66 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. RPS29 ENSGALG00000012229 2201.00 9330.66 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
8. RPS15 ENSGALG00000015195 2190.00 9284.03 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
9. gga-mir-3533 ENSGALG00000027736 2125.00 9008.47 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. RPL4 ENSGALG00000007711 1924.00 8156.38 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
11. PPIA ENSGALG00000028600 1856.00 7868.11 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
12. RPS2 ENSGALG00000005490 1809.00 7668.86 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
13. RPL23A ENSGALG00000003966 1709.00 7244.93 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
14. RPS4 RPS4 1680.00 7121.99
15. gga-mir-3527 gga-mir-3527 1665.00 7058.40
16. RPSA 1629.00 6905.79 ribosomal protein SA
17. RPS28 ENSGALG00000024398 1601.00 6787.09 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
18. RPL15 ENSGALG00000011290 1543.00 6541.21 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. MT-ATP6 MT-ATP6 1496.00 6341.97
20. RPS8 ENSGALG00000010124 1420.00 6019.78 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPLP1 ENSGALG00000030878 1390.00 5892.60 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
22. RPL13 ENSGALG00000006179 1384.00 5867.17 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
23. HBZ ENSGALG00000023740 1360.00 5765.42 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
24. RPL7A ENSGALG00000003197 1337.00 5667.92 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. RPL19 ENSGALG00000001658 1318.00 5587.37 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
26. RPL35 ENSGALG00000035677 1305.00 5532.26 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
27. RPS14 ENSGALG00000004588 1305.00 5532.26 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
28. RPS11 ENSGALG00000017299 1224.00 5188.88 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
29. RPL27A ENSGALG00000005948 1199.00 5082.90 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
30. RPS21 ENSGALG00000005338 1199.00 5082.90 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. RPL24 ENSGALG00000015339 1198.00 5078.66 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
32. RPL27 ENSGALG00000002837 1152.00 4883.65 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
33. RPL29 ENSGALG00000026978 1139.00 4828.54 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
34. HBG1 HBG1 1126.00 4773.43
35. MT-ND5 MT-ND5 1124.00 4764.95
36. RPL32 ENSGALG00000027142 1069.00 4531.79 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
37. RPL8 ENSGALG00000016232 1064.00 4510.60 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
38. RPL26 RPL26 1047.00 4438.53
39. GNB2L1 ENSGALG00000000122 1043.00 4421.57 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
40. RPS27A ENSGALG00000036790 1041.00 4413.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. RPL6 ENSGALG00000004818 1039.00 4404.61 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
42. RPL12 ENSGALG00000008806 1037.00 4396.14 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
43. RPL36 ENSGALG00000000474 1020.00 4324.07 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
44. MT-ND1 MT-ND1 1011.00 4285.91
45. RPL18A 996.00 4222.32 ribosomal protein L18a
46. SNRPD1 ENSGALG00000041334 975.00 4133.30 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
47. NME2 ENSGALG00000002932 969.00 4107.86 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
48. RPS15A ENSGALG00000006771 967.00 4099.39 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
49. ENSGALG00000018384 ENSGALG00000018384 926.00 3925.58
50. RPS12 ENSGALG00000013990 926.00 3925.58 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
51. MT-ND3 MT-ND3 900.00 3815.35
52. RPL38 ENSGALG00000001465 879.00 3726.33 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
53. RPL7 ENSGALG00000035252 862.00 3654.26 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
54. RPS16 ENSGALG00000026490 849.00 3599.15 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. ALDOC ENSGALG00000026077 828.00 3510.13 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
56. MDK ENSGALG00000008367 824.00 3493.17 midkine [Source:NCBI gene;Acc:423196]
57. RPS23 ENSGALG00000015617 822.00 3484.69 ribosomal protein S23
58. TCEB3 ENSGALG00000034625 811.00 3438.06 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
59. RPS7 ENSGALG00000016392 805.00 3412.62 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
60. MT-ND6 MT-ND6 802.00 3399.90
61. RPS25 ENSGALG00000007699 786.00 3332.08 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
62. ENO1 ENSGALG00000002377 777.00 3293.92 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
63. RPL37A ENSGALG00000011472 764.00 3238.81 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
64. RPL10A ENSGALG00000002644 760.00 3221.85 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
65. MT-ND4 MT-ND4 745.00 3158.27
66. RPL5 ENSGALG00000005922 736.00 3120.11 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
67. RPL14 ENSGALG00000043379 732.00 3103.15 ribosomal protein L14
68. RPS13 ENSGALG00000006096 711.00 3014.13 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
69. ANP32B ENSGALG00000037483 707.00 2997.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
70. RPL21 ENSGALG00000027035 692.00 2933.58 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
71. HBE 690.00 2925.10 hemoglobin subunit epsilon
72. RPL36AL ENSGALG00000004952 683.00 2895.43 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
73. RPS17 ENSGALG00000002157 677.00 2869.99 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. UBB ENSGALG00000004509 641.00 2717.38 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
75. RPS3 ENSGALG00000017330 637.00 2700.42 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
76. STMN1 ENSGALG00000001475 636.00 2696.18 stathmin 1 [Source:NCBI gene;Acc:396057]
77. RPS3A ENSGALG00000010077 620.00 2628.35 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
78. CIRBP ENSGALG00000030918 615.00 2607.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
79. RPS24 ENSGALG00000004871 605.00 2564.77 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
80. PRDX1 ENSGALG00000010243 594.00 2518.13 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
81. LDHB ENSGALG00000035836 587.00 2488.46 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
82. RPS6 ENSGALG00000015082 583.00 2471.50 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
83. ENSGALG00000028992 ENSGALG00000028992 575.00 2437.59
84. RPS20 ENSGALG00000014432 575.00 2437.59 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
85. MT-CYB MT-CYB 570.00 2416.39
86. RPL23 ENSGALG00000001634 562.00 2382.48 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
87. EEF1D 554.00 2348.56 eukaryotic translation elongation factor 1 delta, transcript variant X13
88. PKM ENSGALG00000001992 543.00 2301.93 pyruvate kinase M1/2 [Source:NCBI gene;Acc:396456]
89. HMGN2 HMGN2 521.00 2208.67
90. ENSGALG00000028649 ENSGALG00000028649 519.00 2200.19
91. TMSB4X ENSGALG00000026383 507.00 2149.32 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
92. RPL37 ENSGALG00000014833 504.00 2136.60 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
93. ATP5G3 500.00 2119.64 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
94. MT-CO1 MT-CO1 492.00 2085.73
95. FTH FTH 464.00 1967.03
96. ZNF593 ENSGALG00000000542 456.00 1933.11 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
97. CHCHD2 ENSGALG00000002495 445.00 1886.48 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
98. ATP5L ENSGALG00000006899 428.00 1814.41 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
99. EIF5A2 ENSGALG00000009309 421.00 1784.74 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
100. MMP15 ENSGALG00000038758 421.00 1784.74 matrix metallopeptidase 15 [Source:HGNC Symbol;Acc:HGNC:7161]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA