Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_anterior_slice_1, section s28.

Sample reads: 124,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 3671.93 29558.98
2. MT-CO3 MT-CO3 3091.57 24887.09
3. MT-ND5 MT-ND5 1397.94 11253.39
4. MT-ATP6 MT-ATP6 1368.15 11013.58
5. ENSGALG00000018386 ENSGALG00000018386 1187.20 9556.94
6. gga-mir-3533 ENSGALG00000027736 1125.41 9059.53 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
7. RPLP1 ENSGALG00000030878 1012.87 8153.59 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. MDK ENSGALG00000008367 934.53 7522.95 midkine [Source:NCBI gene;Acc:423196]
9. RPLP0 ENSGALG00000023294 919.09 7398.66 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. EEF1A EEF1A 845.16 6803.52
11. RPL35A ENSGALG00000007611, ENSGALG00000041230 798.82 6430.49 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
12. RPS23 ENSGALG00000015617 737.03 5933.08 ribosomal protein S23
13. RPL4 ENSGALG00000007711 731.52 5888.72 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
14. RPS10 ENSGALG00000002813 711.66 5728.85 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
15. RPS8 ENSGALG00000010124 697.31 5613.33 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
16. gga-mir-3527 gga-mir-3527 670.83 5400.17
17. MT-CYB MT-CYB 635.53 5116.01
18. RPS28 ENSGALG00000024398 627.80 5053.78 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
19. RPL32 ENSGALG00000027142 615.67 4956.13 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
20. GAPDH ENSGALG00000014442 614.56 4947.20 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
21. RPS11 ENSGALG00000017299 571.53 4600.81 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
22. RPSA 548.36 4414.29 ribosomal protein SA
23. RPS12 ENSGALG00000013990 537.33 4325.50 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
24. MT-ND6 MT-ND6 531.81 4281.06
25. MT-ND4 MT-ND4 522.98 4209.98
26. HBG1 HBG1 515.26 4147.83
27. RPL7A ENSGALG00000003197 508.64 4094.54 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
28. RPS6 ENSGALG00000015082 505.33 4067.90 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
29. RPL29 ENSGALG00000026978 504.23 4059.04 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPL27A ENSGALG00000005948 493.19 3970.17 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
31. GNB2L1 ENSGALG00000000122 486.57 3916.88 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
32. MT-CO1 MT-CO1 484.37 3899.17
33. RPL8 ENSGALG00000016232 479.95 3863.59 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
34. RPL23A ENSGALG00000003966 475.54 3828.09 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
35. HBE 474.44 3819.23 hemoglobin subunit epsilon
36. RPS21 ENSGALG00000005338 472.23 3801.44 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
37. RPL26 RPL26 462.30 3721.51
38. MT-ND2 MT-ND2 460.09 3703.72
39. PPIA ENSGALG00000028600 454.58 3659.36 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
40. RPS2 ENSGALG00000005490 454.58 3659.36 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
41. RPL27 ENSGALG00000002837 451.27 3632.72 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
42. RPL21 ENSGALG00000027035 436.92 3517.20 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
43. RPL38 ENSGALG00000001465 435.82 3508.34 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
44. RPS15A ENSGALG00000006771 431.41 3472.84 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. RPL13 ENSGALG00000006179 413.75 3330.68 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
46. HBZ ENSGALG00000023740 410.44 3304.04 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
47. RPS3A ENSGALG00000010077 409.34 3295.18 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
48. RPS29 ENSGALG00000012229 397.20 3197.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
49. RPS15 ENSGALG00000015195 388.38 3126.45 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. RPL15 ENSGALG00000011290 386.17 3108.66 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
51. RPS4 RPS4 385.07 3099.81
52. RPLP2 ENSGALG00000034811 382.86 3082.02 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
53. RPL14 ENSGALG00000043379 376.24 3028.73 ribosomal protein L14
54. RPL19 ENSGALG00000001658 372.93 3002.08 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
55. TMSB4X ENSGALG00000026383 365.21 2939.93 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
56. RPL12 ENSGALG00000008806 354.17 2851.06 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
57. RPS27A ENSGALG00000036790 353.07 2842.21 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
58. RPL6 ENSGALG00000004818 351.97 2833.35 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
59. RPL36AL ENSGALG00000004952 350.86 2824.42 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
60. RPL24 ENSGALG00000015339 340.93 2744.48 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
61. RPS16 ENSGALG00000026490 334.31 2691.19 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
62. RPL35 ENSGALG00000035677 333.21 2682.33 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
63. RPS7 ENSGALG00000016392 325.49 2620.19 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. RPL5 ENSGALG00000005922 315.56 2540.25 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
65. RPS14 ENSGALG00000004588 310.04 2495.82 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
66. TCEB3 ENSGALG00000034625 306.73 2469.17 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
67. ANP32B ENSGALG00000037483 300.11 2415.88 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. SNRPD1 ENSGALG00000041334 299.01 2407.03 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
69. RPL36 ENSGALG00000000474 292.39 2353.73 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. EEF1D 283.56 2282.65 eukaryotic translation elongation factor 1 delta, transcript variant X13
71. ENSGALG00000028649 ENSGALG00000028649 283.56 2282.65
72. RPS20 ENSGALG00000014432 282.46 2273.80 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
73. TXN ENSGALG00000015704 281.35 2264.86 thioredoxin [Source:NCBI gene;Acc:396437]
74. NME2 ENSGALG00000002932 278.04 2238.22 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
75. RPS25 ENSGALG00000007699 264.80 2131.64 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
76. CIRBP ENSGALG00000030918 262.60 2113.93 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
77. RPL23 ENSGALG00000001634 258.18 2078.34 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
78. NUCKS1 ENSGALG00000000708 252.67 2033.99 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
79. AKAP12 ENSGALG00000036240 246.05 1980.70 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
80. RPS13 ENSGALG00000006096 246.05 1980.70 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
81. HMGN2 HMGN2 241.63 1945.12
82. RPL18A 237.22 1909.62 ribosomal protein L18a
83. CRHOA CRHOA 235.01 1891.83
84. ENO1 ENSGALG00000002377 230.60 1856.33 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
85. ENSGALG00000002696 ENSGALG00000002696 227.29 1829.68
86. ENSGALG00000028992 ENSGALG00000028992 225.08 1811.89
87. MT-ND1 MT-ND1 225.08 1811.89
88. RPL7 ENSGALG00000035252 225.08 1811.89 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
89. HMGN5 ENSGALG00000007131 222.88 1794.18 high mobility group nucleosome binding domain 5, transcript variant X1
90. RPL37A ENSGALG00000011472 222.88 1794.18 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
91. STMN1 ENSGALG00000001475 219.57 1767.53 stathmin 1 [Source:NCBI gene;Acc:396057]
92. MT-ND3 MT-ND3 217.36 1749.74
93. RPL37 ENSGALG00000014833 217.36 1749.74 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
94. EEF1B2 ENSGALG00000008590 216.26 1740.89 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
95. RPL10A ENSGALG00000002644 206.33 1660.95 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
96. SLC25A6_1 ENSGALG00000016691 204.12 1643.16 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
97. RPL3 ENSGALG00000012172 198.60 1598.73 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
98. PRDX1 ENSGALG00000010243 196.40 1581.02 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. EEF2 ENSGALG00000033884 195.29 1572.08 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
100. EIF5A2 ENSGALG00000009309 195.29 1572.08 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA