Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RFX4

Gene Name Gene ID Reads Annotation
RFX4 ENSG00000111783 1382 regulatory factor X4 [Source:HGNC Symbol;Acc:HGNC:9985]



Genes with expression patterns similar to RFX4

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. RFX4 ENSG00000111783 1382 2 1.000 1.000 regulatory factor X4 [Source:HGNC Symbol;Acc:HGNC:9985]
2. SOX2 ENSG00000181449 19791 1.708 0.866 0.842 SRY-box 2 [Source:HGNC Symbol;Acc:HGNC:11195]
3. LINC00461 ENSG00000245526 4465 1.661 0.848 0.813 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]
4. MSI1 ENSG00000135097 6935 1.66 0.864 0.796 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
5. RND2 ENSG00000108830 3761 1.624 0.810 0.814 Rho family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:18315]
6. TTYH1 ENSG00000167614, ENSG00000275650, ENSG00000276537, ENSG00000276887 2414 1.613 0.823 0.790 tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
7. ZIC4 ENSG00000174963 2667 1.607 0.836 0.771 Zic family member 4 [Source:HGNC Symbol;Acc:HGNC:20393]
8. ZIC1 ENSG00000152977 18260 1.604 0.878 0.726 Zic family member 1 [Source:HGNC Symbol;Acc:HGNC:12872]
9. POU3F2 ENSG00000184486 2683 1.572 0.805 0.767 POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
10. CKB ENSG00000166165 54181 1.571 0.807 0.764 creatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]
11. HOXB-AS3 ENSG00000233101 1776 1.57 0.782 0.788 HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
12. HES6 ENSG00000144485 4284 1.556 0.758 0.798 hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]
13. ZIC5 ENSG00000139800 441 1.549 0.809 0.740 Zic family member 5 [Source:HGNC Symbol;Acc:HGNC:20322]
14. IGFBPL1 ENSG00000137142 3283 1.543 0.783 0.760 insulin like growth factor binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
15. TMEM47 ENSG00000147027 4552 1.536 0.834 0.702 transmembrane protein 47 [Source:HGNC Symbol;Acc:HGNC:18515]
16. LOC100240734 1898 1.532 0.785 0.747 uncharacterized LOC100240734
17. ENPP2 ENSG00000136960 3320 1.528 0.817 0.711 ectonucleotide pyrophosphatase/phosphodiesterase 2 [Source:HGNC Symbol;Acc:HGNC:3357]
18. LFNG ENSG00000106003 1260 1.527 0.756 0.771 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:6560]
19. FZD10 ENSG00000111432 608 1.527 0.784 0.743 frizzled class receptor 10 [Source:HGNC Symbol;Acc:HGNC:4039]
20. CELSR1 ENSG00000075275 716 1.526 0.734 0.792 cadherin EGF LAG seven-pass G-type receptor 1 [Source:HGNC Symbol;Acc:HGNC:1850]
21. RHBDL3 ENSG00000141314 2571 1.52 0.763 0.757 rhomboid like 3 [Source:HGNC Symbol;Acc:HGNC:16502]
22. SYT2 ENSG00000143858 2364 1.52 0.778 0.742 synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
23. DLL1 ENSG00000198719, ENSG00000275555 1642 1.518 0.753 0.765 delta like canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2908]
24. SOX1 ENSG00000182968 1339 1.515 0.777 0.738 SRY-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]
25. DTX4 ENSG00000110042 2639 1.51 0.770 0.740 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
26. ARL4A ENSG00000122644 3071 1.501 0.718 0.783 ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
27. SCUBE2 ENSG00000175356 1730 1.495 0.788 0.707 signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
28. WNT3A ENSG00000154342 267 1.472 0.760 0.712 Wnt family member 3A [Source:HGNC Symbol;Acc:HGNC:15983]
29. CELSR2 ENSG00000143126 3566 1.467 0.743 0.724 cadherin EGF LAG seven-pass G-type receptor 2 [Source:HGNC Symbol;Acc:HGNC:3231]
30. ZIC3 ENSG00000156925 420 1.464 0.743 0.721 Zic family member 3 [Source:HGNC Symbol;Acc:HGNC:12874]
31. WSCD1 ENSG00000179314 1121 1.459 0.756 0.703 WSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29060]
32. PTPRZ1 ENSG00000106278 1326 1.458 0.734 0.724 protein tyrosine phosphatase, receptor type Z1 [Source:HGNC Symbol;Acc:HGNC:9685]
33. FGFR3 ENSG00000068078 2862 1.457 0.748 0.709 fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
34. FAM167A ENSG00000154319 299 1.448 0.726 0.722 family with sequence similarity 167 member A [Source:HGNC Symbol;Acc:HGNC:15549]
35. MSX1 ENSG00000163132 2038 1.446 0.724 0.722 msh homeobox 1 [Source:HGNC Symbol;Acc:HGNC:7391]
36. ZIC2 ENSG00000043355 4457 0.834 0.834 - Zic family member 2 [Source:HGNC Symbol;Acc:HGNC:12873]
37. AXIN2 ENSG00000168646 2778 0.821 0.821 - axin 2 [Source:HGNC Symbol;Acc:HGNC:904]
38. DDR1 ENSG00000137332, ENSG00000204580, ENSG00000215522, ENSG00000223680, ENSG00000229767, ENSG00000230456, ENSG00000234078 1204 0.821 - 0.821 discoidin domain receptor tyrosine kinase 1 [Source:HGNC Symbol;Acc:HGNC:2730]
39. HOXC5 ENSG00000172789, ENSG00000273046 4001 0.818 0.818 - homeobox C5 [Source:NCBI gene;Acc:3222]
40. SOX3 ENSG00000134595 5297 0.813 0.813 - SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
41. SEMA5B ENSG00000082684 2716 0.811 0.811 - semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
42. HOXC-AS1 ENSG00000250451 204 0.808 0.808 - HOXC cluster antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:43749]
43. RPRML ENSG00000179673 96 0.808 - 0.808 reprimo like [Source:HGNC Symbol;Acc:HGNC:32422]
44. ENKUR ENSG00000151023 106 0.807 0.807 - enkurin, TRPC channel interacting protein [Source:HGNC Symbol;Acc:HGNC:28388]
45. CCER2 ENSG00000262484, ENSG00000283099 118 0.807 - 0.807 coiled-coil glutamate rich protein 2 [Source:HGNC Symbol;Acc:HGNC:44662]
46. HOXB2 ENSG00000173917 6040 0.806 0.806 - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
47. DCC ENSG00000187323 538 0.806 0.806 - DCC netrin 1 receptor [Source:HGNC Symbol;Acc:HGNC:2701]
48. APCDD1 ENSG00000154856 2448 0.799 0.799 - APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
49. C1orf194 ENSG00000179902 140 0.793 - 0.793 chromosome 1 open reading frame 194 [Source:HGNC Symbol;Acc:HGNC:32331]
50. GALNT16 ENSG00000100626 516 0.793 - 0.793 polypeptide N-acetylgalactosaminyltransferase 16 [Source:HGNC Symbol;Acc:HGNC:23233]
51. ADCY2 ENSG00000078295 722 0.791 - 0.791 adenylate cyclase 2 [Source:HGNC Symbol;Acc:HGNC:233]
52. SALL1 ENSG00000103449 458 0.784 0.784 - spalt like transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:10524]
53. TOX3 ENSG00000103460 1758 0.782 0.782 - TOX high mobility group box family member 3 [Source:HGNC Symbol;Acc:HGNC:11972]
54. TPPP3 ENSG00000159713 5982 0.78 - 0.780 tubulin polymerization promoting protein family member 3 [Source:HGNC Symbol;Acc:HGNC:24162]
55. FLJ12825 ENSG00000248265 822 0.78 - 0.780 uncharacterized LOC440101 [Source:NCBI gene;Acc:440101]
56. PAX7 ENSG00000009709 810 0.78 - 0.780 paired box 7 [Source:HGNC Symbol;Acc:HGNC:8621]
57. MIAT ENSG00000225783 2977 0.775 0.775 - myocardial infarction associated transcript [Source:HGNC Symbol;Acc:HGNC:33425]
58. OLIG3 ENSG00000177468 918 0.771 0.771 - oligodendrocyte transcription factor 3 [Source:HGNC Symbol;Acc:HGNC:18003]
59. CRABP1 ENSG00000166426 2178 0.768 0.768 - cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2338]
60. SLIT1 ENSG00000187122 3023 0.768 - 0.768 slit guidance ligand 1 [Source:HGNC Symbol;Acc:HGNC:11085]
61. SLC2A1 ENSG00000117394 2892 0.766 0.766 - solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]
62. CNIH2 ENSG00000174871 3037 0.764 0.764 - cornichon family AMPA receptor auxiliary protein 2 [Source:HGNC Symbol;Acc:HGNC:28744]
63. LRRN1 ENSG00000175928 3973 0.762 0.762 - leucine rich repeat neuronal 1 [Source:HGNC Symbol;Acc:HGNC:20980]
64. PRDM13 ENSG00000112238 312 0.762 0.762 - PR/SET domain 13 [Source:HGNC Symbol;Acc:HGNC:13998]
65. LINC00925 LINC00925 517 0.76 0.760 -
66. TKTL1 ENSG00000007350 1212 0.758 0.758 - transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]
67. FZD3 ENSG00000104290 11650 0.758 0.758 - frizzled class receptor 3 [Source:HGNC Symbol;Acc:HGNC:4041]
68. HES5 ENSG00000197921, ENSG00000273529 9293 0.758 0.758 - hes family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:19764]
69. RGMA ENSG00000182175 3405 0.757 0.757 - repulsive guidance molecule BMP co-receptor a [Source:HGNC Symbol;Acc:HGNC:30308]
70. WNT7A ENSG00000154764 131 0.753 0.753 - Wnt family member 7A [Source:HGNC Symbol;Acc:HGNC:12786]
71. NUAK2 ENSG00000163545 538 0.751 - 0.751 NUAK family kinase 2 [Source:HGNC Symbol;Acc:HGNC:29558]
72. GDPD2 ENSG00000130055 49 0.747 - 0.747 glycerophosphodiester phosphodiesterase domain containing 2 [Source:HGNC Symbol;Acc:HGNC:25974]
73. C9orf135 ENSG00000204711 56 0.743 - 0.743 chromosome 9 open reading frame 135 [Source:HGNC Symbol;Acc:HGNC:31422]
74. NKD1 ENSG00000140807 2100 0.743 0.743 - naked cuticle homolog 1 [Source:HGNC Symbol;Acc:HGNC:17045]
75. VIM ENSG00000026025 143979 0.742 0.742 - vimentin [Source:HGNC Symbol;Acc:HGNC:12692]
76. MAP6 ENSG00000171533 1692 0.741 - 0.741 microtubule associated protein 6 [Source:HGNC Symbol;Acc:HGNC:6868]
77. KIF21A ENSG00000139116 4975 0.741 0.741 - kinesin family member 21A [Source:HGNC Symbol;Acc:HGNC:19349]
78. NRARP ENSG00000198435 1658 0.74 0.740 - NOTCH regulated ankyrin repeat protein [Source:HGNC Symbol;Acc:HGNC:33843]
79. LAMC3 ENSG00000050555 1951 0.736 0.736 - laminin subunit gamma 3 [Source:HGNC Symbol;Acc:HGNC:6494]
80. PDPN ENSG00000162493 5095 0.734 0.734 - podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
81. HS6ST1 ENSG00000136720 4974 0.733 0.733 - heparan sulfate 6-O-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5201]
82. NRCAM ENSG00000091129 1790 0.732 - 0.732 neuronal cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:7994]
83. WNT1 ENSG00000125084 1392 0.731 0.731 - Wnt family member 1 [Source:HGNC Symbol;Acc:HGNC:12774]
84. CSPG5 ENSG00000114646 558 0.727 - 0.727 chondroitin sulfate proteoglycan 5 [Source:HGNC Symbol;Acc:HGNC:2467]
85. NES ENSG00000132688 20034 0.727 - 0.727 nestin [Source:HGNC Symbol;Acc:HGNC:7756]
86. TMEM158 ENSG00000249992 678 0.725 0.725 - transmembrane protein 158 (gene/pseudogene) [Source:HGNC Symbol;Acc:HGNC:30293]
87. SLC1A2 ENSG00000110436 1231 0.724 0.724 - solute carrier family 1 member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
88. GBX2 ENSG00000168505 227 0.724 0.724 - gastrulation brain homeobox 2 [Source:HGNC Symbol;Acc:HGNC:4186]
89. PNMA2 ENSG00000240694 835 0.724 - 0.724 PNMA family member 2 [Source:HGNC Symbol;Acc:HGNC:9159]
90. ASRGL1 ENSG00000162174 4293 0.721 0.721 - asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
91. FAM181A ENSG00000140067, ENSG00000273533 1757 0.719 0.719 - family with sequence similarity 181 member A [Source:HGNC Symbol;Acc:HGNC:20491]
92. GDF10 ENSG00000266524 711 0.719 0.719 - growth differentiation factor 10 [Source:HGNC Symbol;Acc:HGNC:4215]
93. MIR124-2HG ENSG00000254377 940 0.718 - 0.718 MIR124-2 host gene [Source:HGNC Symbol;Acc:HGNC:48723]
94. JAM2 ENSG00000154721 1771 0.718 0.718 - junctional adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:14686]
95. METRN ENSG00000103260 1750 0.718 - 0.718 meteorin, glial cell differentiation regulator [Source:HGNC Symbol;Acc:HGNC:14151]
96. ILDR2 ENSG00000143195 321 0.717 - 0.717 immunoglobulin like domain containing receptor 2 [Source:HGNC Symbol;Acc:HGNC:18131]
97. PAK3 ENSG00000077264 890 0.715 0.715 - p21 (RAC1) activated kinase 3 [Source:HGNC Symbol;Acc:HGNC:8592]
98. PRTG ENSG00000166450 16951 0.715 0.715 - protogenin [Source:HGNC Symbol;Acc:HGNC:26373]
99. KIAA1147 ENSG00000257093, ENSG00000262599 2599 0.712 0.712 - KIAA1147 [Source:HGNC Symbol;Acc:HGNC:29472]
100. DPYSL5 ENSG00000157851 6855 0.712 0.712 - dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]

There are 13 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA