Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for SOX3

Gene Name Gene ID Reads Annotation
SOX3 ENSG00000134595 5297 SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]



Genes with expression patterns similar to SOX3

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. SOX3 ENSG00000134595 5297 2 1.000 1.000 SRY-box 3 [Source:HGNC Symbol;Acc:HGNC:11199]
2. NRARP ENSG00000198435 1658 1.899 0.918 0.981 NOTCH regulated ankyrin repeat protein [Source:HGNC Symbol;Acc:HGNC:33843]
3. FAM181A ENSG00000140067, ENSG00000273533 1757 1.871 0.950 0.921 family with sequence similarity 181 member A [Source:HGNC Symbol;Acc:HGNC:20491]
4. CKB ENSG00000166165 54181 1.867 0.943 0.924 creatine kinase B [Source:HGNC Symbol;Acc:HGNC:1991]
5. RHBDL3 ENSG00000141314 2571 1.86 0.936 0.924 rhomboid like 3 [Source:HGNC Symbol;Acc:HGNC:16502]
6. HES5 ENSG00000197921, ENSG00000273529 9293 1.853 0.899 0.954 hes family bHLH transcription factor 5 [Source:HGNC Symbol;Acc:HGNC:19764]
7. POU3F2 ENSG00000184486 2683 1.84 0.903 0.937 POU class 3 homeobox 2 [Source:HGNC Symbol;Acc:HGNC:9215]
8. TTYH1 ENSG00000167614, ENSG00000275650, ENSG00000276537, ENSG00000276887 2414 1.814 0.921 0.893 tweety family member 1 [Source:HGNC Symbol;Acc:HGNC:13476]
9. LOC100240734 1898 1.799 0.880 0.919 uncharacterized LOC100240734
10. MYCL ENSG00000116990 1128 1.796 0.872 0.924 MYCL proto-oncogene, bHLH transcription factor [Source:HGNC Symbol;Acc:HGNC:7555]
11. PAX6 ENSG00000007372 3710 1.793 0.876 0.917 paired box 6 [Source:HGNC Symbol;Acc:HGNC:8620]
12. SOX2 ENSG00000181449 19791 1.791 0.923 0.868 SRY-box 2 [Source:HGNC Symbol;Acc:HGNC:11195]
13. DTX4 ENSG00000110042 2639 1.789 0.907 0.882 deltex E3 ubiquitin ligase 4 [Source:HGNC Symbol;Acc:HGNC:29151]
14. CELSR2 ENSG00000143126 3566 1.788 0.854 0.934 cadherin EGF LAG seven-pass G-type receptor 2 [Source:HGNC Symbol;Acc:HGNC:3231]
15. DPYSL5 ENSG00000157851 6855 1.777 0.874 0.903 dihydropyrimidinase like 5 [Source:HGNC Symbol;Acc:HGNC:20637]
16. PDPN ENSG00000162493 5095 1.77 0.876 0.894 podoplanin [Source:HGNC Symbol;Acc:HGNC:29602]
17. LINC01158 1332 1.762 0.845 0.917 long intergenic non-protein coding RNA 1158, transcript variant 4
18. HOXB-AS3 ENSG00000233101 1776 1.761 0.863 0.898 HOXB cluster antisense RNA 3 [Source:HGNC Symbol;Acc:HGNC:40283]
19. KLHDC8A ENSG00000162873 2265 1.758 0.851 0.907 kelch domain containing 8A [Source:HGNC Symbol;Acc:HGNC:25573]
20. RND2 ENSG00000108830 3761 1.753 0.863 0.890 Rho family GTPase 2 [Source:HGNC Symbol;Acc:HGNC:18315]
21. TSPAN18 ENSG00000157570 9391 1.747 0.871 0.876 tetraspanin 18 [Source:HGNC Symbol;Acc:HGNC:20660]
22. IGFBPL1 ENSG00000137142 3283 1.741 0.910 0.831 insulin like growth factor binding protein like 1 [Source:HGNC Symbol;Acc:HGNC:20081]
23. SLC1A2 ENSG00000110436 1231 1.734 0.852 0.882 solute carrier family 1 member 2 [Source:HGNC Symbol;Acc:HGNC:10940]
24. DLL1 ENSG00000198719, ENSG00000275555 1642 1.728 0.931 0.797 delta like canonical Notch ligand 1 [Source:HGNC Symbol;Acc:HGNC:2908]
25. SEMA5B ENSG00000082684 2716 1.726 0.841 0.885 semaphorin 5B [Source:HGNC Symbol;Acc:HGNC:10737]
26. MIAT ENSG00000225783 2977 1.722 0.866 0.856 myocardial infarction associated transcript [Source:HGNC Symbol;Acc:HGNC:33425]
27. LINC00461 ENSG00000245526 4465 1.716 0.858 0.858 long intergenic non-protein coding RNA 461 [Source:HGNC Symbol;Acc:HGNC:42810]
28. SRGAP3 ENSG00000196220 5297 1.714 0.834 0.880 SLIT-ROBO Rho GTPase activating protein 3 [Source:HGNC Symbol;Acc:HGNC:19744]
29. RGMA ENSG00000182175 3405 1.699 0.814 0.885 repulsive guidance molecule BMP co-receptor a [Source:HGNC Symbol;Acc:HGNC:30308]
30. CSPG5 ENSG00000114646 558 1.691 0.793 0.898 chondroitin sulfate proteoglycan 5 [Source:HGNC Symbol;Acc:HGNC:2467]
31. NOTCH1 ENSG00000148400 5516 1.682 0.846 0.836 notch 1 [Source:HGNC Symbol;Acc:HGNC:7881]
32. AGO1 ENSG00000092847 2525 1.682 0.828 0.854 argonaute 1, RISC catalytic component [Source:HGNC Symbol;Acc:HGNC:3262]
33. MSI1 ENSG00000135097 6935 1.681 0.860 0.821 musashi RNA binding protein 1 [Source:HGNC Symbol;Acc:HGNC:7330]
34. CRABP1 ENSG00000166426 2178 1.677 0.843 0.834 cellular retinoic acid binding protein 1 [Source:HGNC Symbol;Acc:HGNC:2338]
35. GREB1 ENSG00000196208 4256 1.664 0.863 0.801 growth regulating estrogen receptor binding 1 [Source:HGNC Symbol;Acc:HGNC:24885]
36. SLC2A1 ENSG00000117394 2892 1.662 0.795 0.867 solute carrier family 2 member 1 [Source:HGNC Symbol;Acc:HGNC:11005]
37. HES6 ENSG00000144485 4284 1.658 0.881 0.777 hes family bHLH transcription factor 6 [Source:HGNC Symbol;Acc:HGNC:18254]
38. TKTL1 ENSG00000007350 1212 1.654 0.823 0.831 transketolase like 1 [Source:HGNC Symbol;Acc:HGNC:11835]
39. JAM2 ENSG00000154721 1771 1.652 0.814 0.838 junctional adhesion molecule 2 [Source:HGNC Symbol;Acc:HGNC:14686]
40. ASRGL1 ENSG00000162174 4293 1.645 0.762 0.883 asparaginase like 1 [Source:HGNC Symbol;Acc:HGNC:16448]
41. SCUBE2 ENSG00000175356 1730 1.644 0.800 0.844 signal peptide, CUB domain and EGF like domain containing 2 [Source:HGNC Symbol;Acc:HGNC:30425]
42. FGFR3 ENSG00000068078 2862 1.635 0.757 0.878 fibroblast growth factor receptor 3 [Source:HGNC Symbol;Acc:HGNC:3690]
43. CDH4 ENSG00000179242, ENSG00000280641 1069 1.633 0.769 0.864 cadherin 4 [Source:HGNC Symbol;Acc:HGNC:1763]
44. SYT2 ENSG00000143858 2364 1.631 0.814 0.817 synaptotagmin 2 [Source:HGNC Symbol;Acc:HGNC:11510]
45. LRIG1 ENSG00000144749, ENSG00000282243 1639 1.626 0.812 0.814 leucine rich repeats and immunoglobulin like domains 1 [Source:HGNC Symbol;Acc:HGNC:17360]
46. CXCR4 ENSG00000121966 4708 1.623 0.818 0.805 C-X-C motif chemokine receptor 4 [Source:HGNC Symbol;Acc:HGNC:2561]
47. CCDC85C ENSG00000205476 3808 1.619 0.765 0.854 coiled-coil domain containing 85C [Source:HGNC Symbol;Acc:HGNC:35459]
48. RGS20 ENSG00000147509 282 1.619 0.716 0.903 regulator of G protein signaling 20 [Source:HGNC Symbol;Acc:HGNC:14600]
49. SLITRK2 ENSG00000185985 905 1.617 0.869 0.748 SLIT and NTRK like family member 2 [Source:HGNC Symbol;Acc:HGNC:13449]
50. TOX3 ENSG00000103460 1758 1.617 0.843 0.774 TOX high mobility group box family member 3 [Source:HGNC Symbol;Acc:HGNC:11972]
51. LINC00925 LINC00925 517 1.617 0.822 0.795
52. SOX1 ENSG00000182968 1339 1.615 0.805 0.810 SRY-box 1 [Source:HGNC Symbol;Acc:HGNC:11189]
53. FAM181B ENSG00000182103 461 1.609 0.748 0.861 family with sequence similarity 181 member B [Source:HGNC Symbol;Acc:HGNC:28512]
54. SYT11 ENSG00000132718 3832 1.608 0.820 0.788 synaptotagmin 11 [Source:HGNC Symbol;Acc:HGNC:19239]
55. PTPRZ1 ENSG00000106278 1326 1.607 0.772 0.835 protein tyrosine phosphatase, receptor type Z1 [Source:HGNC Symbol;Acc:HGNC:9685]
56. MIR124-2HG ENSG00000254377 940 1.598 0.774 0.824 MIR124-2 host gene [Source:HGNC Symbol;Acc:HGNC:48723]
57. NES ENSG00000132688 20034 1.595 0.767 0.828 nestin [Source:HGNC Symbol;Acc:HGNC:7756]
58. OTP ENSG00000171540 179 1.59 0.744 0.846 orthopedia homeobox [Source:HGNC Symbol;Acc:HGNC:8518]
59. LAMP5 ENSG00000125869 710 1.587 0.780 0.807 lysosomal associated membrane protein family member 5 [Source:HGNC Symbol;Acc:HGNC:16097]
60. CPLX2 ENSG00000145920 573 1.584 0.803 0.781 complexin 2 [Source:HGNC Symbol;Acc:HGNC:2310]
61. TMEM132B ENSG00000139364 1165 1.583 0.835 0.748 transmembrane protein 132B [Source:HGNC Symbol;Acc:HGNC:29397]
62. GLDC ENSG00000178445 513 1.582 0.717 0.865 glycine decarboxylase [Source:HGNC Symbol;Acc:HGNC:4313]
63. TUBB2B ENSG00000137285 35642 1.581 0.790 0.791 tubulin beta 2B class IIb [Source:HGNC Symbol;Acc:HGNC:30829]
64. INSM1 ENSG00000173404 3113 1.579 0.708 0.871 INSM transcriptional repressor 1 [Source:HGNC Symbol;Acc:HGNC:6090]
65. NEUROG1 ENSG00000181965 1244 1.578 0.733 0.845 neurogenin 1 [Source:HGNC Symbol;Acc:HGNC:7764]
66. FLJ12825 ENSG00000248265 822 1.577 0.765 0.812 uncharacterized LOC440101 [Source:NCBI gene;Acc:440101]
67. ARL4A ENSG00000122644 3071 1.575 0.775 0.800 ADP ribosylation factor like GTPase 4A [Source:HGNC Symbol;Acc:HGNC:695]
68. ZBTB16 ENSG00000109906 287 1.575 0.744 0.831 zinc finger and BTB domain containing 16 [Source:HGNC Symbol;Acc:HGNC:12930]
69. LFNG ENSG00000106003 1260 1.574 0.751 0.823 LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase [Source:HGNC Symbol;Acc:HGNC:6560]
70. CRNDE ENSG00000245694 3754 1.565 0.770 0.795 colorectal neoplasia differentially expressed [Source:HGNC Symbol;Acc:HGNC:37078]
71. TMEM176B ENSG00000106565 1876 1.56 0.719 0.841 transmembrane protein 176B [Source:HGNC Symbol;Acc:HGNC:29596]
72. ADD2 ENSG00000075340 810 1.558 0.760 0.798 adducin 2 [Source:HGNC Symbol;Acc:HGNC:244]
73. MAP1B ENSG00000131711 44568 1.555 0.783 0.772 microtubule associated protein 1B [Source:HGNC Symbol;Acc:HGNC:6836]
74. FGFBP3 ENSG00000174721 4234 1.554 0.755 0.799 fibroblast growth factor binding protein 3 [Source:HGNC Symbol;Acc:HGNC:23428]
75. WSCD1 ENSG00000179314 1121 1.551 0.731 0.820 WSC domain containing 1 [Source:HGNC Symbol;Acc:HGNC:29060]
76. FMN2 ENSG00000155816 1062 1.545 0.810 0.735 formin 2 [Source:HGNC Symbol;Acc:HGNC:14074]
77. APCDD1 ENSG00000154856 2448 1.544 0.828 0.716 APC down-regulated 1 [Source:HGNC Symbol;Acc:HGNC:15718]
78. PLP1 ENSG00000123560 2266 1.537 0.730 0.807 proteolipid protein 1 [Source:HGNC Symbol;Acc:HGNC:9086]
79. HS6ST1 ENSG00000136720 4974 1.537 0.764 0.773 heparan sulfate 6-O-sulfotransferase 1 [Source:HGNC Symbol;Acc:HGNC:5201]
80. NOVA1 ENSG00000139910 5990 1.529 0.702 0.827 NOVA alternative splicing regulator 1 [Source:HGNC Symbol;Acc:HGNC:7886]
81. LHX5-AS1 ENSG00000257935 271 1.526 0.711 0.815 LHX5 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:49570]
82. NHLH2 ENSG00000177551 1191 1.521 0.707 0.814 nescient helix-loop-helix 2 [Source:HGNC Symbol;Acc:HGNC:7818]
83. OLFM1 ENSG00000130558 1162 1.518 0.775 0.743 olfactomedin 1 [Source:HGNC Symbol;Acc:HGNC:17187]
84. C8orf46 375 1.517 0.736 0.781 chromosome 8 open reading frame 46
85. TAGLN3 ENSG00000144834 10185 1.5 0.753 0.747 transgelin 3 [Source:HGNC Symbol;Acc:HGNC:29868]
86. PAK3 ENSG00000077264 890 1.5 0.785 0.715 p21 (RAC1) activated kinase 3 [Source:HGNC Symbol;Acc:HGNC:8592]
87. DPYSL2 ENSG00000092964 47074 1.485 0.715 0.770 dihydropyrimidinase like 2 [Source:HGNC Symbol;Acc:HGNC:3014]
88. HEYL ENSG00000163909 2647 1.483 0.708 0.775 hes related family bHLH transcription factor with YRPW motif-like [Source:HGNC Symbol;Acc:HGNC:4882]
89. RGS16 ENSG00000143333 2239 1.481 0.706 0.775 regulator of G protein signaling 16 [Source:HGNC Symbol;Acc:HGNC:9997]
90. RNF165 ENSG00000141622 1865 1.479 0.724 0.755 ring finger protein 165 [Source:HGNC Symbol;Acc:HGNC:31696]
91. SCRT2 ENSG00000215397 343 1.478 0.738 0.740 scratch family transcriptional repressor 2 [Source:HGNC Symbol;Acc:HGNC:15952]
92. COTL1 ENSG00000103187 30280 1.474 0.745 0.729 coactosin like F-actin binding protein 1 [Source:HGNC Symbol;Acc:HGNC:18304]
93. NELL2 ENSG00000184613 1519 1.465 0.715 0.750 neural EGFL like 2 [Source:HGNC Symbol;Acc:HGNC:7751]
94. PAX3 ENSG00000135903 1126 1.431 0.712 0.719 paired box 3 [Source:HGNC Symbol;Acc:HGNC:8617]
95. PRDM13 ENSG00000112238 312 1.425 0.722 0.703 PR/SET domain 13 [Source:HGNC Symbol;Acc:HGNC:13998]
96. ZIC2 ENSG00000043355 4457 0.938 0.938 - Zic family member 2 [Source:HGNC Symbol;Acc:HGNC:12873]
97. ZIC1 ENSG00000152977 18260 0.918 0.918 - Zic family member 1 [Source:HGNC Symbol;Acc:HGNC:12872]
98. HOXB2 ENSG00000173917 6040 0.899 0.899 - homeobox B2 [Source:HGNC Symbol;Acc:HGNC:5113]
99. ZIC4 ENSG00000174963 2667 0.896 0.896 - Zic family member 4 [Source:HGNC Symbol;Acc:HGNC:20393]
100. FZD3 ENSG00000104290 11650 0.885 0.885 - frizzled class receptor 3 [Source:HGNC Symbol;Acc:HGNC:4041]

There are 139 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA