Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for RBFOX1

Gene Name Gene ID Reads Annotation
RBFOX1 ENSG00000078328 852 RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]



Genes with expression patterns similar to RBFOX1

Nr. Gene Name Gene ID Reads Σ scores 35d slice1 35d slice2 Annotation
1. RBFOX1 ENSG00000078328 852 2 1.000 1.000 RNA binding fox-1 homolog 1 [Source:HGNC Symbol;Acc:HGNC:18222]
2. SV2C ENSG00000122012 837 1.625 0.777 0.848 synaptic vesicle glycoprotein 2C [Source:HGNC Symbol;Acc:HGNC:30670]
3. MYT1 ENSG00000196132, ENSG00000276876 1089 1.616 0.800 0.816 myelin transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:7622]
4. NEFL ENSG00000277586 6204 1.604 0.775 0.829 neurofilament light [Source:HGNC Symbol;Acc:HGNC:7739]
5. RTN1 ENSG00000139970 4545 1.596 0.821 0.775 reticulon 1 [Source:HGNC Symbol;Acc:HGNC:10467]
6. ATP1A3 ENSG00000105409 428 1.572 0.713 0.859 ATPase Na+/K+ transporting subunit alpha 3 [Source:HGNC Symbol;Acc:HGNC:801]
7. CCDC184 ENSG00000177875 785 1.564 0.704 0.860 coiled-coil domain containing 184 [Source:HGNC Symbol;Acc:HGNC:33749]
8. GAP43 ENSG00000172020 9990 1.55 0.829 0.721 growth associated protein 43 [Source:HGNC Symbol;Acc:HGNC:4140]
9. INA ENSG00000148798 12811 1.549 0.814 0.735 internexin neuronal intermediate filament protein alpha [Source:HGNC Symbol;Acc:HGNC:6057]
10. SCN3A ENSG00000153253 621 1.541 0.715 0.826 sodium voltage-gated channel alpha subunit 3 [Source:HGNC Symbol;Acc:HGNC:10590]
11. GNAO1 ENSG00000087258 567 1.533 0.804 0.729 G protein subunit alpha o1 [Source:HGNC Symbol;Acc:HGNC:4389]
12. STMN2 ENSG00000104435 16286 1.533 0.788 0.745 stathmin 2 [Source:HGNC Symbol;Acc:HGNC:10577]
13. PDLIM1 ENSG00000107438 11977 1.533 0.794 0.739 PDZ and LIM domain 1 [Source:HGNC Symbol;Acc:HGNC:2067]
14. SEZ6L2 ENSG00000174938 1533 1.526 0.776 0.750 seizure related 6 homolog like 2 [Source:HGNC Symbol;Acc:HGNC:30844]
15. KLC1 ENSG00000126214 6387 1.523 0.729 0.794 kinesin light chain 1 [Source:HGNC Symbol;Acc:HGNC:6387]
16. SST ENSG00000157005 12887 1.522 0.816 0.706 somatostatin [Source:HGNC Symbol;Acc:HGNC:11329]
17. RUNDC3A ENSG00000108309 522 1.51 0.701 0.809 RUN domain containing 3A [Source:HGNC Symbol;Acc:HGNC:16984]
18. NELL1 ENSG00000165973 2345 1.506 0.758 0.748 neural EGFL like 1 [Source:HGNC Symbol;Acc:HGNC:7750]
19. NEFM ENSG00000104722 6565 1.5 0.786 0.714 neurofilament medium [Source:HGNC Symbol;Acc:HGNC:7734]
20. MAPT ENSG00000186868, ENSG00000276155, ENSG00000277956 1829 1.5 0.767 0.733 microtubule associated protein tau [Source:HGNC Symbol;Acc:HGNC:6893]
21. TRIM36 ENSG00000152503 452 1.499 0.739 0.760 tripartite motif containing 36 [Source:HGNC Symbol;Acc:HGNC:16280]
22. TUBB2A ENSG00000137267 4508 1.498 0.770 0.728 tubulin beta 2A class IIa [Source:HGNC Symbol;Acc:HGNC:12412]
23. RUFY3 ENSG00000018189 4536 1.496 0.762 0.734 RUN and FYVE domain containing 3 [Source:HGNC Symbol;Acc:HGNC:30285]
24. SYT4 ENSG00000132872 928 1.495 0.774 0.721 synaptotagmin 4 [Source:HGNC Symbol;Acc:HGNC:11512]
25. SNAP25 ENSG00000132639 1533 1.494 0.764 0.730 synaptosome associated protein 25 [Source:HGNC Symbol;Acc:HGNC:11132]
26. ARHGAP36 ENSG00000147256 614 1.489 0.701 0.788 Rho GTPase activating protein 36 [Source:HGNC Symbol;Acc:HGNC:26388]
27. RAB6B ENSG00000154917 1104 1.489 0.725 0.764 RAB6B, member RAS oncogene family [Source:HGNC Symbol;Acc:HGNC:14902]
28. SYT1 ENSG00000067715 4379 1.471 0.757 0.714 synaptotagmin 1 [Source:HGNC Symbol;Acc:HGNC:11509]
29. CDK5R1 ENSG00000176749 4151 1.453 0.727 0.726 cyclin dependent kinase 5 regulatory subunit 1 [Source:HGNC Symbol;Acc:HGNC:1775]
30. MAP2 ENSG00000078018 3573 1.446 0.741 0.705 microtubule associated protein 2 [Source:HGNC Symbol;Acc:HGNC:6839]
31. NSG1 ENSG00000168824 2797 1.441 0.739 0.702 neuronal vesicle trafficking associated 1 [Source:HGNC Symbol;Acc:HGNC:18790]
32. Mar-04 Mar-04 149 0.897 - 0.897
33. AMER2 ENSG00000165566 317 0.88 - 0.880 APC membrane recruitment protein 2 [Source:HGNC Symbol;Acc:HGNC:26360]
34. DUSP8 ENSG00000184545, ENSG00000273793, ENSG00000278165 213 0.856 - 0.856 dual specificity phosphatase 8 [Source:HGNC Symbol;Acc:HGNC:3074]
35. L1CAM ENSG00000198910 1652 0.853 0.853 - L1 cell adhesion molecule [Source:HGNC Symbol;Acc:HGNC:6470]
36. CDK5R2 ENSG00000171450 62 0.849 - 0.849 cyclin dependent kinase 5 regulatory subunit 2 [Source:HGNC Symbol;Acc:HGNC:1776]
37. SCN3B ENSG00000166257 491 0.846 - 0.846 sodium voltage-gated channel beta subunit 3 [Source:HGNC Symbol;Acc:HGNC:20665]
38. SPRN ENSG00000203772 33 0.839 - 0.839 shadow of prion protein [Source:HGNC Symbol;Acc:HGNC:16871]
39. CRMP1 ENSG00000072832 9692 0.827 0.827 - collapsin response mediator protein 1 [Source:HGNC Symbol;Acc:HGNC:2365]
40. DCX ENSG00000077279 9569 0.826 0.826 - doublecortin [Source:HGNC Symbol;Acc:HGNC:2714]
41. AP3B2 ENSG00000103723 307 0.824 - 0.824 adaptor related protein complex 3 subunit beta 2 [Source:HGNC Symbol;Acc:HGNC:567]
42. ELAVL3 ENSG00000196361 2164 0.822 0.822 - ELAV like RNA binding protein 3 [Source:HGNC Symbol;Acc:HGNC:3314]
43. TUBB3 ENSG00000258947 53998 0.818 0.818 - tubulin beta 3 class III [Source:HGNC Symbol;Acc:HGNC:20772]
44. VAT1L ENSG00000171724 1613 0.818 0.818 - vesicle amine transport 1 like [Source:HGNC Symbol;Acc:HGNC:29315]
45. SIT1 ENSG00000137078 12 0.818 - 0.818 signaling threshold regulating transmembrane adaptor 1 [Source:HGNC Symbol;Acc:HGNC:17710]
46. JPH3 ENSG00000154118 420 0.817 - 0.817 junctophilin 3 [Source:HGNC Symbol;Acc:HGNC:14203]
47. LINC00957 ENSG00000235314 72 0.815 - 0.815 long intergenic non-protein coding RNA 957 [Source:HGNC Symbol;Acc:HGNC:22332]
48. AVP ENSG00000101200 3 0.815 - 0.815 arginine vasopressin [Source:HGNC Symbol;Acc:HGNC:894]
49. AKAP6 ENSG00000151320 580 0.811 - 0.811 A-kinase anchoring protein 6 [Source:HGNC Symbol;Acc:HGNC:376]
50. EPS8L1 ENSG00000131037 124 0.807 - 0.807 EPS8 like 1 [Source:HGNC Symbol;Acc:HGNC:21295]
51. CELF5 ENSG00000161082 441 0.807 0.807 - CUGBP Elav-like family member 5 [Source:HGNC Symbol;Acc:HGNC:14058]
52. NCAM1 ENSG00000149294 14656 0.806 0.806 - neural cell adhesion molecule 1 [Source:HGNC Symbol;Acc:HGNC:7656]
53. SRRM4 ENSG00000139767 1060 0.806 0.806 - serine/arginine repetitive matrix 4 [Source:HGNC Symbol;Acc:HGNC:29389]
54. CADPS ENSG00000163618 1353 0.806 0.806 - calcium dependent secretion activator [Source:HGNC Symbol;Acc:HGNC:1426]
55. CAMK2N1 ENSG00000162545 10727 0.805 0.805 - calcium/calmodulin dependent protein kinase II inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:24190]
56. TERF2IP ENSG00000166848 18929 0.805 0.805 - TERF2 interacting protein [Source:HGNC Symbol;Acc:HGNC:19246]
57. PGM5P3-AS1 ENSG00000277631 5 0.805 - 0.805 PGM5P3 antisense RNA 1 [Source:HGNC Symbol;Acc:HGNC:51194]
58. CNTN2 ENSG00000184144 4674 0.801 0.801 - contactin 2 [Source:HGNC Symbol;Acc:HGNC:2172]
59. ANKRD62P1-PARP4P3 ENSG00000189295 10 0.799 - 0.799 ANKRD62P1-PARP4P3 readthrough, transcribed pseudogene [Source:HGNC Symbol;Acc:HGNC:42393]
60. KIF5C ENSG00000168280, ENSG00000276734 1294 0.798 - 0.798 kinesin family member 5C [Source:HGNC Symbol;Acc:HGNC:6325]
61. REEP1 ENSG00000068615 2132 0.797 0.797 - receptor accessory protein 1 [Source:HGNC Symbol;Acc:HGNC:25786]
62. NCAN ENSG00000130287 1136 0.795 0.795 - neurocan [Source:HGNC Symbol;Acc:HGNC:2465]
63. DPYSL3 ENSG00000113657 7319 0.791 0.791 - dihydropyrimidinase like 3 [Source:HGNC Symbol;Acc:HGNC:3015]
64. MLLT11 ENSG00000213190 18099 0.791 0.791 - MLLT11, transcription factor 7 cofactor [Source:HGNC Symbol;Acc:HGNC:16997]
65. ISL1 ENSG00000016082 4314 0.789 0.789 - ISL LIM homeobox 1 [Source:HGNC Symbol;Acc:HGNC:6132]
66. LMO1 ENSG00000166407 258 0.788 - 0.788 LIM domain only 1 [Source:HGNC Symbol;Acc:HGNC:6641]
67. NKAIN3 ENSG00000185942 2284 0.787 0.787 - sodium/potassium transporting ATPase interacting 3 [Source:HGNC Symbol;Acc:HGNC:26829]
68. LOC101060019 8 0.787 - 0.787 uncharacterized LOC101060019
69. ELAVL2 ENSG00000107105 5067 0.785 0.785 - ELAV like RNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:3313]
70. NYAP1 ENSG00000166924 47 0.785 - 0.785 neuronal tyrosine phosphorylated phosphoinositide-3-kinase adaptor 1 [Source:HGNC Symbol;Acc:HGNC:22009]
71. PHACTR3 ENSG00000087495 749 0.785 - 0.785 phosphatase and actin regulator 3 [Source:HGNC Symbol;Acc:HGNC:15833]
72. SRCIN1 ENSG00000273608, ENSG00000277363 177 0.783 - 0.783 SRC kinase signaling inhibitor 1 [Source:HGNC Symbol;Acc:HGNC:29506]
73. RBFOX3 ENSG00000167281 329 0.783 0.783 - RNA binding fox-1 homolog 3 [Source:HGNC Symbol;Acc:HGNC:27097]
74. SLC18A3 ENSG00000187714 4213 0.78 0.780 - solute carrier family 18 member A3 [Source:HGNC Symbol;Acc:HGNC:10936]
75. LOC101929679 4 0.78 - 0.780 uncharacterized LOC101929679
76. GNG2 ENSG00000186469 5596 0.779 0.779 - G protein subunit gamma 2 [Source:HGNC Symbol;Acc:HGNC:4404]
77. KIF1A ENSG00000130294 2920 0.778 0.778 - kinesin family member 1A [Source:HGNC Symbol;Acc:HGNC:888]
78. TUBA1A ENSG00000167552 83799 0.775 0.775 - tubulin alpha 1a [Source:HGNC Symbol;Acc:HGNC:20766]
79. ELAVL4 ENSG00000162374 5082 0.775 0.775 - ELAV like RNA binding protein 4 [Source:HGNC Symbol;Acc:HGNC:3315]
80. CELSR3 ENSG00000008300 408 0.774 0.774 - cadherin EGF LAG seven-pass G-type receptor 3 [Source:HGNC Symbol;Acc:HGNC:3230]
81. ISLR2 ENSG00000167178 161 0.774 - 0.774 immunoglobulin superfamily containing leucine rich repeat 2 [Source:HGNC Symbol;Acc:HGNC:29286]
82. MNX1 ENSG00000130675 512 0.773 0.773 - motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]
83. ATP6V1G2 ENSG00000206445, ENSG00000213760, ENSG00000226850, ENSG00000227587, ENSG00000230900, ENSG00000234668, ENSG00000234920 2106 0.773 0.773 - ATPase H+ transporting V1 subunit G2 [Source:HGNC Symbol;Acc:HGNC:862]
84. SCML4 ENSG00000146285 198 0.773 0.773 - Scm polycomb group protein like 4 [Source:HGNC Symbol;Acc:HGNC:21397]
85. MAPK8IP2 ENSG00000008735 553 0.771 0.771 - mitogen-activated protein kinase 8 interacting protein 2 [Source:HGNC Symbol;Acc:HGNC:6883]
86. ISL2 ENSG00000159556 593 0.77 0.770 - ISL LIM homeobox 2 [Source:HGNC Symbol;Acc:HGNC:18524]
87. RLTPR RLTPR 11 0.769 - 0.769
88. ENO2 ENSG00000111674 2931 0.767 0.767 - enolase 2 [Source:HGNC Symbol;Acc:HGNC:3353]
89. CLVS2 ENSG00000146352 150 0.763 - 0.763 clavesin 2 [Source:HGNC Symbol;Acc:HGNC:23046]
90. SYP ENSG00000102003 170 0.762 - 0.762 synaptophysin [Source:HGNC Symbol;Acc:HGNC:11506]
91. CHGA ENSG00000100604, ENSG00000276781 3476 0.762 0.762 - chromogranin A [Source:HGNC Symbol;Acc:HGNC:1929]
92. VSTM2A ENSG00000170419 227 0.761 0.761 - V-set and transmembrane domain containing 2A [Source:HGNC Symbol;Acc:HGNC:28499]
93. GDAP1L1 ENSG00000124194 1388 0.761 0.761 - ganglioside induced differentiation associated protein 1 like 1 [Source:HGNC Symbol;Acc:HGNC:4213]
94. RET ENSG00000165731 339 0.76 - 0.760 ret proto-oncogene [Source:HGNC Symbol;Acc:HGNC:9967]
95. OLIG1 ENSG00000184221 511 0.76 0.760 - oligodendrocyte transcription factor 1 [Source:HGNC Symbol;Acc:HGNC:16983]
96. CPT1B ENSG00000205560 15 0.759 - 0.759 carnitine palmitoyltransferase 1B [Source:HGNC Symbol;Acc:HGNC:2329]
97. PGM2L1 ENSG00000165434 4182 0.756 0.756 - phosphoglucomutase 2 like 1 [Source:HGNC Symbol;Acc:HGNC:20898]
98. AMY2A ENSG00000243480 10 0.755 - 0.755 amylase, alpha 2A (pancreatic) [Source:HGNC Symbol;Acc:HGNC:477]
99. FABP7 ENSG00000164434 1064 0.755 - 0.755 fatty acid binding protein 7 [Source:HGNC Symbol;Acc:HGNC:3562]
100. ECEL1 ENSG00000171551 286 0.754 0.754 - endothelin converting enzyme like 1 [Source:HGNC Symbol;Acc:HGNC:3147]

There are 61 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA