Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_40hpf_whole_embryo2, section s80.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 5359.92 40178.44
2. tpma ENSDARG00000033683 4168.82 31249.85 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. actb1 ENSDARG00000037746, ENSDARG00000113649 1786.64 13392.81 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1786.64 13392.81 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. mt-nd4 ENSDARG00000063917 1786.64 13392.81 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. pvalb2 ENSDARG00000002768, ENSDARG00000114085 1786.64 13392.81 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
7. rpl19 ENSDARG00000013307 1786.64 13392.81 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
8. rpl8 ENSDARG00000014867 1786.64 13392.81 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
9. rps9 ENSDARG00000011405, ENSDARG00000113248 1786.64 13392.81 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
10. tmsb4x ENSDARG00000077777 1786.64 13392.81 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. acta1b ENSDARG00000055618 1191.09 8928.52 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
12. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 1191.09 8928.52 aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
13. apoa1a ENSDARG00000012076, ENSDARG00000110395 1191.09 8928.52 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
14. apoc1l apoc1l 1191.09 8928.52
15. atp2a1 ENSDARG00000020574 1191.09 8928.52 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
16. btg1 ENSDARG00000027249 1191.09 8928.52 B-cell translocation gene 1, anti-proliferative [Source:ZFIN;Acc:ZDB-GENE-010726-1]
17. calm2a ENSDARG00000031427, ENSDARG00000111871 1191.09 8928.52 calmodulin 2a (phosphorylase kinase, delta) [Source:ZFIN;Acc:ZDB-GENE-030804-3]
18. cdk5r1b ENSDARG00000045087 1191.09 8928.52 cyclin-dependent kinase 5, regulatory subunit 1b (p35) [Source:ZFIN;Acc:ZDB-GENE-040718-220]
19. ckma ENSDARG00000035327, ENSDARG00000114671 1191.09 8928.52 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
20. hmga1a ENSDARG00000028335 1191.09 8928.52 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
21. mt-atp6 ENSDARG00000063911 1191.09 8928.52 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
22. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 1191.09 8928.52 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
23. rplp2l ENSDARG00000011201 1191.09 8928.52 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
24. si:dkey-151g10.6 si:dkey-151g10.6 1191.09 8928.52
25. si:dkey-239j18.3 ENSDARG00000089806 1191.09 8928.52 si:dkey-239j18.3 [Source:ZFIN;Acc:ZDB-GENE-121214-39]
26. tnni2a.4 ENSDARG00000029069 1191.09 8928.52 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
27. AC024175.17 AC024175.17 595.55 4464.30
28. BAZ2B BAZ2B 595.55 4464.30
29. BX296557.2 BX296557.2 595.55 4464.30
30. BX957337.1 BX957337.1 595.55 4464.30
31. C1QBP ENSDARG00000039887 595.55 4464.30 complement component 1, q subcomponent binding protein [Source:ZFIN;Acc:ZDB-GENE-050417-408]
32. C24H7orf50 595.55 4464.30 chromosome 24 C7orf50 homolog, transcript variant X2
33. CABZ01044814.2 CABZ01044814.2 595.55 4464.30
34. CABZ01074130.1 ENSDARG00000105274 595.55 4464.30
35. CNDP1 CNDP1 595.55 4464.30
36. FP067396.1 FP067396.1 595.55 4464.30
37. IDH2 ENSDARG00000003795 595.55 4464.30 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
38. NDST1 NDST1 595.55 4464.30
39. NRD1 NRD1 595.55 4464.30
40. SPDL1 ENSDARG00000103996, ENSDARG00000109617 595.55 4464.30 spindle apparatus coiled-coil protein 1 [Source:ZFIN;Acc:ZDB-GENE-070928-7]
41. TNRC6A ENSDARG00000079688 595.55 4464.30 trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
42. TRIM65 ENSDARG00000077098 595.55 4464.30 tripartite motif containing 65 [Source:ZFIN;Acc:ZDB-GENE-130613-1]
43. UBC ENSDARG00000102632 595.55 4464.30 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
44. UBE2D2 ENSDARG00000043484 595.55 4464.30 ubiquitin-conjugating enzyme E2D 2 (UBC4/5 homolog, yeast) [Source:ZFIN;Acc:ZDB-GENE-120312-1]
45. ZFHX2 595.55 4464.30 zinc finger homeobox 2, transcript variant X2
46. ZFHX3 ENSDARG00000103057 595.55 4464.30 zinc finger homeobox 3 [Source:ZFIN;Acc:ZDB-GENE-030131-7577]
47. acbd6 ENSDARG00000039456 595.55 4464.30 acyl-CoA binding domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2810]
48. agpat9 agpat9 595.55 4464.30
49. ak1 ENSDARG00000001950 595.55 4464.30 adenylate kinase 1 [Source:ZFIN;Acc:ZDB-GENE-040822-37]
50. akr1a1b ENSDARG00000052030, ENSDARG00000112549 595.55 4464.30 aldo-keto reductase family 1, member A1b (aldehyde reductase) [Source:ZFIN;Acc:ZDB-GENE-050417-118]
51. and1 ENSDARG00000088514 595.55 4464.30 actinodin1 [Source:ZFIN;Acc:ZDB-GENE-030131-9105]
52. anxa1a ENSDARG00000026726 595.55 4464.30 annexin A1a [Source:ZFIN;Acc:ZDB-GENE-030131-6664]
53. ap1s2 ENSDARG00000058504, ENSDARG00000114515 595.55 4464.30 adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
54. apex1 ENSDARG00000045843 595.55 4464.30 APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
55. apobb apobb 595.55 4464.30
56. ash1l ENSDARG00000070981 595.55 4464.30 ash1 (absent, small, or homeotic)-like (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-6101]
57. atp5mf ENSDARG00000037867 595.55 4464.30 ATP synthase membrane subunit f [Source:ZFIN;Acc:ZDB-GENE-050309-87]
58. azin1b ENSDARG00000035869, ENSDARG00000115647 595.55 4464.30 antizyme inhibitor 1b [Source:ZFIN;Acc:ZDB-GENE-030121-1]
59. capza1a ENSDARG00000034240 595.55 4464.30 capping actin protein of muscle Z-line subunit alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-5237]
60. cav3 ENSDARG00000024141 595.55 4464.30 caveolin 3 [Source:ZFIN;Acc:ZDB-GENE-050522-426]
61. cbx5 ENSDARG00000061187 595.55 4464.30 chromobox homolog 5 (HP1 alpha homolog, Drosophila) [Source:ZFIN;Acc:ZDB-GENE-030131-5553]
62. ccne2 ENSDARG00000098529 595.55 4464.30 cyclin E2 [Source:ZFIN;Acc:ZDB-GENE-030131-9689]
63. cd63 ENSDARG00000025147, ENSDARG00000115979 595.55 4464.30 CD63 molecule [Source:ZFIN;Acc:ZDB-GENE-030131-180]
64. cdc42bpb ENSDARG00000019383 595.55 4464.30 CDC42 binding protein kinase beta (DMPK-like) [Source:ZFIN;Acc:ZDB-GENE-030131-3647]
65. ceacam1 ENSDARG00000041119, ENSDARG00000111374 595.55 4464.30 carcinoembryonic antigen-related cell adhesion molecule 1 [Source:ZFIN;Acc:ZDB-GENE-010724-14]
66. cfl1 ENSDARG00000021124 595.55 4464.30 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
67. ckap5 ENSDARG00000102674 595.55 4464.30 cytoskeleton associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-051120-174]
68. ckmb ENSDARG00000040565 595.55 4464.30 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
69. cnih4 ENSDARG00000087759 595.55 4464.30 cornichon family AMPA receptor auxiliary protein 4 [Source:ZFIN;Acc:ZDB-GENE-030131-868]
70. cnrip1a ENSDARG00000091683 595.55 4464.30 cannabinoid receptor interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-040801-126]
71. col11a1a ENSDARG00000026165, ENSDARG00000115341 595.55 4464.30 collagen, type XI, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-070209-167]
72. col1a1a ENSDARG00000012405, ENSDARG00000116113 595.55 4464.30 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
73. copb1 ENSDARG00000056557, ENSDARG00000116045 595.55 4464.30 coatomer protein complex, subunit beta 1 [Source:ZFIN;Acc:ZDB-GENE-030219-38]
74. cpm ENSDARG00000011769, ENSDARG00000113736 595.55 4464.30 carboxypeptidase M [Source:ZFIN;Acc:ZDB-GENE-041210-191]
75. cyt1l ENSDARG00000036832 595.55 4464.30 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
76. depdc1a ENSDARG00000018165, ENSDARG00000114097 595.55 4464.30 DEP domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9827]
77. eno1a ENSDARG00000022456, ENSDARG00000116458 595.55 4464.30 enolase 1a, (alpha) [Source:ZFIN;Acc:ZDB-GENE-030131-6048]
78. ep300b ENSDARG00000061108 595.55 4464.30 E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
79. eya2 ENSDARG00000018984 595.55 4464.30 EYA transcriptional coactivator and phosphatase 2 [Source:ZFIN;Acc:ZDB-GENE-040912-24]
80. foxp2 ENSDARG00000005453 595.55 4464.30 forkhead box P2 [Source:ZFIN;Acc:ZDB-GENE-041203-2]
81. gamt ENSDARG00000070844, ENSDARG00000109945 595.55 4464.30 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
82. gata3 ENSDARG00000016526 595.55 4464.30 GATA binding protein 3 [Source:ZFIN;Acc:ZDB-GENE-990415-82]
83. gltscr1 gltscr1 595.55 4464.30
84. h1f0 ENSDARG00000038559 595.55 4464.30 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
85. hbae1 595.55 4464.30 hemoglobin, alpha embryonic 1
86. hbbe1.1_1 ENSDARG00000113599 595.55 4464.30 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
87. hddc3 ENSDARG00000020473 595.55 4464.30 HD domain containing 3 [Source:ZFIN;Acc:ZDB-GENE-050417-377]
88. hnrnpa0a ENSDARG00000089302 595.55 4464.30 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
89. hoxa10b ENSDARG00000031337 595.55 4464.30 homeobox A10b [Source:ZFIN;Acc:ZDB-GENE-990415-97]
90. huwe1 ENSDARG00000016782 595.55 4464.30 HECT, UBA and WWE domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-081104-387]
91. icn ENSDARG00000009978 595.55 4464.30 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
92. id1 ENSDARG00000040764 595.55 4464.30 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
93. igfbp5b ENSDARG00000025348 595.55 4464.30 insulin-like growth factor binding protein 5b [Source:ZFIN;Acc:ZDB-GENE-040319-2]
94. jam2b ENSDARG00000079071 595.55 4464.30 junctional adhesion molecule 2b [Source:ZFIN;Acc:ZDB-GENE-080229-3]
95. jam3a ENSDARG00000114589 595.55 4464.30 junctional adhesion molecule 3a [Source:ZFIN;Acc:ZDB-GENE-070424-177]
96. jph1b ENSDARG00000038826 595.55 4464.30 junctophilin 1b [Source:ZFIN;Acc:ZDB-GENE-060616-389]
97. kbtbd12 ENSDARG00000001882 595.55 4464.30 kelch repeat and BTB (POZ) domain containing 12 [Source:ZFIN;Acc:ZDB-GENE-050904-1]
98. kctd5 kctd5 595.55 4464.30
99. kdm1a ENSDARG00000060679 595.55 4464.30 lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
100. krt8 ENSDARG00000058358, ENSDARG00000109279 595.55 4464.30 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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