Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Results for apex1

Gene Name Gene ID Reads Annotation
apex1 ENSDARG00000045843 6345 APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]










Genes with expression patterns similar to apex1

Nr. Gene Name Gene ID Reads Σ scores 28hpf trunk1 28hpf trunk2 28hpf whole1 28hpf whole2 28hpf whole3 PA 40hpf trunk1 40hpf trunk2 40hpf whole embryo1 40hpf whole embryo2 Annotation
1. apex1 ENSDARG00000045843 6345 9 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 1.000 APEX nuclease (multifunctional DNA repair enzyme) 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2761]
2. prmt1 ENSDARG00000010246 11311 3.924 0.740 0.794 0.785 - - 0.741 - 0.864 - protein arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-030131-693]
3. ewsr1b ENSDARG00000020465, ENSDARG00000117011 10260 3.802 - - 0.806 0.766 0.807 - 0.709 0.714 - EWS RNA-binding protein 1b [Source:ZFIN;Acc:ZDB-GENE-030131-1600]
4. meaf6 ENSDARG00000101216 6865 3.706 - 0.726 0.703 0.779 - - 0.763 0.735 - MYST/Esa1-associated factor 6 [Source:ZFIN;Acc:ZDB-GENE-040808-12]
5. zgc:162967 zgc:162967 2132 3.465 0.848 - - - 0.922 - 0.707 - 0.988
6. kdm1a ENSDARG00000060679 6152 3.398 - - 0.805 - - - 0.793 0.803 0.997 lysine (K)-specific demethylase 1a [Source:ZFIN;Acc:ZDB-GENE-030131-7828]
7. snrnp70 ENSDARG00000077126 5921 3.38 - 0.829 0.731 - 0.946 - - 0.874 - small nuclear ribonucleoprotein 70 (U1) [Source:ZFIN;Acc:ZDB-GENE-040825-2]
8. hirip3 ENSDARG00000027749, ENSDARG00000115688 5875 3.244 - - 0.844 - 0.815 - 0.825 0.760 - HIRA interacting protein 3 [Source:ZFIN;Acc:ZDB-GENE-030131-5753]
9. cdkn2aipnl ENSDARG00000053395 5107 3.202 - 0.860 0.783 0.832 - 0.727 - - - CDKN2A interacting protein N-terminal like [Source:ZFIN;Acc:ZDB-GENE-041010-154]
10. atf7ip ENSDARG00000069619 5495 3.158 - 0.781 - 0.718 - - 0.910 0.749 - activating transcription factor 7 interacting protein [Source:ZFIN;Acc:ZDB-GENE-061103-178]
11. stip1 ENSDARG00000004906 7742 3.154 0.715 - - - - 0.712 0.738 - 0.989 stress-induced phosphoprotein 1 [Source:ZFIN;Acc:ZDB-GENE-041121-17]
12. ap1s2 ENSDARG00000058504, ENSDARG00000114515 6499 3.125 0.719 - - - - - 0.847 0.833 0.726 adaptor related protein complex 1 subunit sigma 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5448]
13. irx5a ENSDARG00000034043 1694 3.1 - - 0.703 0.714 0.951 - 0.732 - - iroquois homeobox 5a [Source:ZFIN;Acc:ZDB-GENE-010716-2]
14. dbn1 ENSDARG00000069113 4527 3.065 0.708 - 0.716 - - 0.802 0.839 - - drebrin 1 [Source:ZFIN;Acc:ZDB-GENE-091204-284]
15. tmsb ENSDARG00000054911 6411 3.062 0.788 0.777 - - - 0.700 0.797 - - thymosin, beta [Source:ZFIN;Acc:ZDB-GENE-050307-5]
16. ilf2 ENSDARG00000014591 14543 3.025 0.742 - 0.801 0.762 - - - 0.720 - interleukin enhancer binding factor 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2345]
17. uba1 ENSDARG00000037559 11579 2.975 0.781 - - 0.706 - 0.748 0.740 - - ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
18. srsf6b ENSDARG00000016783 9926 2.911 - - - 0.704 - 0.741 0.714 0.752 - serine/arginine-rich splicing factor 6b [Source:ZFIN;Acc:ZDB-GENE-041219-1]
19. fam60al 2846 2.885 0.702 - - 0.716 - - 0.705 0.762 - family with sequence similarity 60, member A, like
20. selt2 12741 2.684 0.829 - - - 0.909 - - - 0.946 selenoprotein T, 2
21. snrpd1 ENSDARG00000011648 8615 2.527 - - 0.768 - - 0.767 - - 0.992 small nuclear ribonucleoprotein D1 polypeptide [Source:ZFIN;Acc:ZDB-GENE-020419-14]
22. smc1al ENSDARG00000058203 8838 2.474 0.763 - 0.765 - 0.946 - - - - structural maintenance of chromosomes 1A, like [Source:ZFIN;Acc:ZDB-GENE-040426-57]
23. nkain1 ENSDARG00000006859 1961 2.473 - - - - 0.935 0.717 0.821 - - sodium/potassium transporting ATPase interacting 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1472]
24. wu:fb17g07 wu:fb17g07 10567 2.459 0.792 0.739 - - - - 0.928 - -
25. C1QBP ENSDARG00000039887 11186 2.441 0.754 - - - - - 0.704 - 0.983 complement component 1, q subcomponent binding protein [Source:ZFIN;Acc:ZDB-GENE-050417-408]
26. pl10 pl10 10795 2.428 - 0.827 - - - 0.813 0.788 - -
27. cdc6 ENSDARG00000009942, ENSDARG00000109602 2540 2.424 - 0.748 - - - - 0.854 0.822 - cell division cycle 6 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050506-131]
28. snrpd3l ENSDARG00000076283 7655 2.406 - - 0.751 0.731 - - 0.924 - - small nuclear ribonucleoprotein D3 polypeptide, like [Source:ZFIN;Acc:ZDB-GENE-030131-5219]
29. nucks1a ENSDARG00000078473 28285 2.401 - - 0.859 - - 0.739 - 0.803 - nuclear casein kinase and cyclin-dependent kinase substrate 1a [Source:ZFIN;Acc:ZDB-GENE-040912-175]
30. tomm40l ENSDARG00000036721 1714 2.392 0.796 0.848 - - - - 0.748 - - translocase of outer mitochondrial membrane 40 homolog, like [Source:ZFIN;Acc:ZDB-GENE-040426-2319]
31. vdac1 ENSDARG00000045132 8051 2.391 0.801 - - - - 0.783 0.807 - - voltage-dependent anion channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-6514]
32. nudt3a ENSDARG00000016256 2713 2.384 0.703 0.793 - - - - 0.888 - - nudix (nucleoside diphosphate linked moiety X)-type motif 3a [Source:ZFIN;Acc:ZDB-GENE-040426-792]
33. hmgb3b ENSDARG00000006408 3442 2.378 0.771 0.885 - - - - 0.722 - - high mobility group box 3b [Source:ZFIN;Acc:ZDB-GENE-050417-290]
34. palm1a ENSDARG00000026882, ENSDARG00000115356 3425 2.377 0.768 0.773 - - - - 0.836 - - paralemmin 1a [Source:ZFIN;Acc:ZDB-GENE-050417-409]
35. top2b ENSDARG00000034195 3715 2.376 - - 0.732 - - - 0.822 0.822 - DNA topoisomerase II beta [Source:ZFIN;Acc:ZDB-GENE-041008-136]
36. si:ch73-21k16.6 si:ch73-21k16.6 4896 2.375 0.788 0.758 - - - - 0.829 - -
37. gstm gstm 4064 2.373 0.764 - - - - - 0.859 0.750 -
38. appb ENSDARG00000055543, ENSDARG00000109552 4461 2.367 - 0.726 - - 0.920 - 0.721 - - amyloid beta (A4) precursor protein b [Source:ZFIN;Acc:ZDB-GENE-020220-1]
39. mrps16 ENSDARG00000098972, ENSDARG00000115452 2085 2.365 0.761 0.827 - - - - 0.777 - - mitochondrial ribosomal protein S16 [Source:ZFIN;Acc:ZDB-GENE-041010-123]
40. ube2i ube2i 13024 2.353 - - - 0.795 0.738 - 0.820 - -
41. ywhag2 ENSDARG00000071658, ENSDARG00000116741 3326 2.347 0.761 0.795 - - - - 0.791 - - 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide 2 [Source:ZFIN;Acc:ZDB-GENE-061023-2]
42. TNRC6A ENSDARG00000079688 14433 2.338 - - 0.730 - - - 0.724 - 0.884 trinucleotide repeat containing 6a [Source:ZFIN;Acc:ZDB-GENE-030131-2519]
43. prnprs3 ENSDARG00000003705 1854 2.334 0.729 - - - - 0.802 0.803 - - prion protein, related sequence 3 [Source:ZFIN;Acc:ZDB-GENE-041221-3]
44. eya1 ENSDARG00000014259, ENSDARG00000116267 5111 2.334 0.839 0.706 - - - - 0.789 - - EYA transcriptional coactivator and phosphatase 1 [Source:ZFIN;Acc:ZDB-GENE-990712-18]
45. tbl3 ENSDARG00000052344 1530 2.334 0.757 0.816 - - - - 0.761 - - transducin (beta)-like 3 [Source:ZFIN;Acc:ZDB-GENE-041114-104]
46. ncl ENSDARG00000002710 16951 2.332 - 0.772 0.720 - 0.840 - - - - nucleolin [Source:ZFIN;Acc:ZDB-GENE-030131-6986]
47. rpf2 ENSDARG00000043960 2719 2.329 0.742 0.863 - - - - 0.724 - - ribosome production factor 2 homolog [Source:ZFIN;Acc:ZDB-GENE-040426-2501]
48. tgif1 ENSDARG00000059337 4020 2.321 - - - 0.702 0.825 - 0.794 - - TGFB-induced factor homeobox 1 [Source:ZFIN;Acc:ZDB-GENE-030131-475]
49. ddx39ab ENSDARG00000015111 11619 2.315 0.758 0.713 - - - - 0.844 - - DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab [Source:ZFIN;Acc:ZDB-GENE-040426-2902]
50. dnajc15 ENSDARG00000038309 1274 2.315 0.730 0.782 - - - - 0.803 - - DnaJ (Hsp40) homolog, subfamily C, member 15 [Source:ZFIN;Acc:ZDB-GENE-040801-216]
51. elavl1 11672 2.309 - - 0.713 - 0.826 0.770 - - - ELAV like RNA binding protein 1, transcript variant X3
52. nup62l ENSDARG00000020527, ENSDARG00000111836, ENSDARG00000112620 3763 2.308 - - 0.779 0.776 - - 0.753 - - nucleoporin 62 like [Source:ZFIN;Acc:ZDB-GENE-030131-8491]
53. morf4l1 ENSDARG00000041155, ENSDARG00000111898, ENSDARG00000111981 4044 2.307 - - - - - 0.796 0.756 0.755 - mortality factor 4 like 1 [Source:ZFIN;Acc:ZDB-GENE-040718-348]
54. lrpprc ENSDARG00000043970 3847 2.301 0.717 0.854 - - - - 0.730 - - leucine-rich pentatricopeptide repeat containing [Source:ZFIN;Acc:ZDB-GENE-030131-7887]
55. ptpro ENSDARG00000100422, ENSDARG00000110470 1850 2.297 - - 0.789 0.749 - - 0.759 - - protein tyrosine phosphatase, receptor type, O [Source:ZFIN;Acc:ZDB-GENE-070424-54]
56. uhrf1 ENSDARG00000103409 3282 2.297 0.734 - - 0.742 - - - 0.821 - ubiquitin-like with PHD and ring finger domains 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2039]
57. ssb ENSDARG00000029252 3394 2.294 - 0.879 0.702 - - - - 0.713 - Sjogren syndrome antigen B (autoantigen La) [Source:ZFIN;Acc:ZDB-GENE-030131-223]
58. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 72444 2.293 0.703 - 0.744 - - - - 0.846 - heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
59. fen1 ENSDARG00000011404 3358 2.293 - - 0.726 0.748 - - 0.819 - - flap structure-specific endonuclease 1 [Source:ZFIN;Acc:ZDB-GENE-031112-11]
60. rgmd ENSDARG00000034013, ENSDARG00000111872 4752 2.278 0.776 0.748 - - - - 0.754 - - RGM domain family, member D [Source:ZFIN;Acc:ZDB-GENE-030131-561]
61. celf2 ENSDARG00000002131, ENSDARG00000110267 15605 2.276 - 0.816 - - - - 0.745 0.715 - cugbp, Elav-like family member 2 [Source:ZFIN;Acc:ZDB-GENE-030826-35]
62. rad21a_1 ENSDARG00000006092 4482 2.276 - - 0.715 - - - 0.847 0.714 - RAD21 cohesin complex component a [Source:ZFIN;Acc:ZDB-GENE-030131-994]
63. supt6h ENSDARG00000006524 3221 2.272 - 0.820 - - - 0.724 0.728 - - SPT6 homolog, histone chaperone [Source:ZFIN;Acc:ZDB-GENE-030131-7949]
64. nfya ENSDARG00000042004, ENSDARG00000114231 6606 2.272 - 0.761 0.708 - - - - 0.803 - nuclear transcription factor Y, alpha [Source:ZFIN;Acc:ZDB-GENE-010501-1]
65. ENDOD1_5 ENDOD1_5 8723 2.265 0.742 0.775 0.748 - - - - - -
66. hsd17b10 ENSDARG00000017781 1793 2.264 0.726 0.750 - - - - 0.788 - - hydroxysteroid (17-beta) dehydrogenase 10 [Source:ZFIN;Acc:ZDB-GENE-041010-201]
67. txn2 ENSDARG00000034777 4071 2.26 0.707 0.786 - - - - 0.767 - - thioredoxin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-1795]
68. nup205 ENSDARG00000042530, ENSDARG00000114489 2255 2.255 - 0.703 - - - - 0.757 0.795 - nucleoporin 205 [Source:ZFIN;Acc:ZDB-GENE-040715-8]
69. akirin2 ENSDARG00000058729 13245 2.253 - - - 0.765 - - 0.726 0.762 - akirin 2 [Source:ZFIN;Acc:ZDB-GENE-040426-2944]
70. snrpc ENSDARG00000009871 9567 2.25 0.761 - - 0.738 - - 0.751 - - small nuclear ribonucleoprotein polypeptide C [Source:ZFIN;Acc:ZDB-GENE-020419-26]
71. rbb4 rbb4 15541 2.25 - - 0.795 - - - 0.740 0.715 -
72. hdgfrp2 7462 2.245 0.727 0.804 - - - - - 0.714 - hepatoma-derived growth factor-related protein 2, transcript variant X1
73. top1l ENSDARG00000070545 40529 2.23 - - - 0.729 - - 0.736 0.765 - DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
74. srpk3 ENSDARG00000005916 1546 2.226 0.754 0.703 - - - - 0.769 - - SRSF protein kinase 3 [Source:ZFIN;Acc:ZDB-GENE-101025-2]
75. pfdn5 ENSDARG00000035043, ENSDARG00000109218, ENSDARG00000110370, ENSDARG00000113603 7566 2.222 - 0.816 - - - 0.705 0.701 - - prefoldin 5 [Source:ZFIN;Acc:ZDB-GENE-030131-6858]
76. timm9 ENSDARG00000043865 2456 2.216 0.700 0.808 - - - - 0.708 - - translocase of inner mitochondrial membrane 9 homolog [Source:ZFIN;Acc:ZDB-GENE-021206-14]
77. LYRM7 ENSDARG00000079815, ENSDARG00000111617, ENSDARG00000114632 2283 2.212 0.714 0.796 - - - - 0.702 - - LYR motif containing 7 [Source:ZFIN;Acc:ZDB-GENE-070615-32]
78. dpysl2b ENSDARG00000032083, ENSDARG00000109782 3487 2.208 - - 0.705 - - - 0.714 0.789 - dihydropyrimidinase-like 2b [Source:ZFIN;Acc:ZDB-GENE-031105-1]
79. elof1 ENSDARG00000099453 6176 2.207 0.722 - - 0.766 - - 0.719 - - ELF1 homolog, elongation factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1385]
80. mrps2 ENSDARG00000103198 2410 2.203 - 0.724 - - - 0.718 0.761 - - mitochondrial ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-070112-992]
81. kpnb3 ENSDARG00000040245 7967 2.192 - 0.752 - 0.708 - - 0.732 - - karyopherin (importin) beta 3 [Source:ZFIN;Acc:ZDB-GENE-030424-2]
82. slc27a1a ENSDARG00000006240, ENSDARG00000109799 1471 2.192 0.703 0.754 - - - - 0.735 - - solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
83. ddx5 ENSDARG00000038068 35302 2.183 - - 0.711 0.738 0.734 - - - - DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
84. plch1 ENSDARG00000079253 1216 2.18 0.700 0.742 - - - - 0.738 - - phospholipase C, eta 1 [Source:ZFIN;Acc:ZDB-GENE-060503-398]
85. nae1 ENSDARG00000011301, ENSDARG00000111542 1505 2.156 - 0.729 0.701 - - 0.726 - - - nedd8 activating enzyme E1 subunit 1 [Source:ZFIN;Acc:ZDB-GENE-040426-1552]
86. CR388231.3 ENSDARG00000105601 2404 2.144 - 0.712 - - - - 0.709 0.723 -
87. atp1a2a ENSDARG00000010472, ENSDARG00000111818, ENSDARG00000115733 6341 2.133 0.704 0.728 - - - - 0.701 - - ATPase Na+/K+ transporting subunit alpha 2 [Source:ZFIN;Acc:ZDB-GENE-001212-6]
88. NDST1 NDST1 1584 1.913 - - - - 0.924 - - - 0.989
89. snx12 ENSDARG00000019060 9563 1.91 - - - - 0.930 - - - 0.980 sorting nexin 12 [Source:ZFIN;Acc:ZDB-GENE-040426-787]
90. smyd5 ENSDARG00000071669 1194 1.803 - 0.816 - - - - - - 0.987 SMYD family member 5 [Source:ZFIN;Acc:ZDB-GENE-040912-39]
91. nup155 ENSDARG00000001777 3417 1.802 0.809 - - - - - - - 0.993 nucleoporin 155 [Source:ZFIN;Acc:ZDB-GENE-040426-711]
92. pdzd11 ENSDARG00000053194, ENSDARG00000116591 1858 1.801 - - - - - - 0.809 - 0.992 PDZ domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-040426-2544]
93. ewsr1a ENSDARG00000020258, ENSDARG00000113252 11221 1.787 - - - - 0.925 - 0.862 - - EWS RNA-binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2317]
94. dnmt3 dnmt3 1912 1.767 - - - - 0.924 - 0.843 - -
95. ckap5 ENSDARG00000102674 5068 1.748 - - 0.765 - - - - - 0.983 cytoskeleton associated protein 5 [Source:ZFIN;Acc:ZDB-GENE-051120-174]
96. xpo7 ENSDARG00000005540, ENSDARG00000110221 4566 1.747 - - - - 0.913 - 0.834 - - exportin 7 [Source:ZFIN;Acc:ZDB-GENE-060628-2]
97. acbd6 ENSDARG00000039456 2355 1.742 - - - - - - 0.752 - 0.990 acyl-CoA binding domain containing 6 [Source:ZFIN;Acc:ZDB-GENE-030131-2810]
98. myh10 ENSDARG00000000103 7522 1.733 0.746 - - - - - - - 0.987 myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
99. ylpm1 ENSDARG00000043680 7676 1.716 - - 0.807 - - - 0.909 - - YLP motif containing 1 [Source:ZFIN;Acc:ZDB-GENE-030131-2196]
100. boc ENSDARG00000074335 4832 1.716 - - - - 0.949 - 0.767 - - BOC cell adhesion associated, oncogene regulated [Source:ZFIN;Acc:ZDB-GENE-030131-6560]

There are 2057 more genes with r >= 0.7  Show all

Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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