Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s31.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6299.81 50710.00
2. EEF1A EEF1A 1602.60 12900.05
3. RPS10 ENSGALG00000002813 1117.38 8994.29 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
4. RPS3A ENSGALG00000010077 1110.92 8942.29 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
5. MT-ATP6 MT-ATP6 1098.01 8838.38
6. GAL10 GAL10 1060.87 8539.42
7. RPLP1 ENSGALG00000030878 830.77 6687.24 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. RPS23 ENSGALG00000015617 754.07 6069.85 ribosomal protein S23
9. RPS8 ENSGALG00000010124 739.54 5952.89 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. GAPDH ENSGALG00000014442 727.43 5855.41 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPL35A ENSGALG00000007611, ENSGALG00000041230 719.35 5790.37 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
12. ANXA1 ENSGALG00000015148 695.13 5595.41 annexin A1 [Source:NCBI gene;Acc:404271]
13. RPL8 ENSGALG00000016232 638.62 5140.54 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
14. TXN ENSGALG00000015704 546.58 4399.67 thioredoxin [Source:NCBI gene;Acc:396437]
15. MT-CYB MT-CYB 536.08 4315.15
16. MT-CO1 MT-CO1 527.20 4243.67
17. RPL7A ENSGALG00000003197 526.40 4237.23 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. RAN ENSGALG00000002569 511.06 4113.75 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
19. MT-ND4 MT-ND4 507.02 4081.23
20. RPS4 RPS4 493.30 3970.79
21. RPS6 ENSGALG00000015082 489.26 3938.27 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
22. MDK ENSGALG00000008367 486.84 3918.79 midkine [Source:NCBI gene;Acc:423196]
23. RPL27A ENSGALG00000005948 486.03 3912.27 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. RPLP0 ENSGALG00000023294 481.99 3879.75 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
25. RPL19 ENSGALG00000001658 473.92 3814.79 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
26. RPL23A ENSGALG00000003966 460.19 3704.28 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
27. RPL4 ENSGALG00000007711 460.19 3704.28 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
28. MT-ND3 MT-ND3 456.16 3671.84
29. RPL29 ENSGALG00000026978 442.43 3561.32 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
30. RPL27 ENSGALG00000002837 440.01 3541.84 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
31. RPS12 ENSGALG00000013990 437.59 3522.36 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
32. gga-mir-3533 ENSGALG00000027736 435.17 3502.88 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
33. ENSGALG00000002696 ENSGALG00000002696 428.71 3450.88
34. RPL36AL ENSGALG00000004952 417.40 3359.84 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
35. RPL26 RPL26 414.98 3340.36
36. RPL15 ENSGALG00000011290 412.56 3320.88 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
37. RPL5 ENSGALG00000005922 391.57 3151.92 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
38. RPS21 ENSGALG00000005338 389.95 3138.88 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. RPSA 387.53 3119.40 ribosomal protein SA
40. ENSGALG00000018384 ENSGALG00000018384 372.19 2995.92
41. RPL23 ENSGALG00000001634 368.96 2969.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
42. gga-mir-3527 gga-mir-3527 368.15 2963.40
43. RPS14 ENSGALG00000004588 366.54 2950.44 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
44. RPL21 ENSGALG00000027035 365.73 2943.92 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. RPS28 ENSGALG00000024398 365.73 2943.92 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
46. PHB2 ENSGALG00000014567 364.12 2930.97 prohibitin 2 [Source:NCBI gene;Acc:771124]
47. RPS15 ENSGALG00000015195 360.89 2904.97 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
48. RPL6 ENSGALG00000004818 359.27 2891.93 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. RPL14 ENSGALG00000043379 358.47 2885.49 ribosomal protein L14
50. RPL13 ENSGALG00000006179 347.97 2800.97 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
51. RPL18A 347.16 2794.45 ribosomal protein L18a
52. RPL37 ENSGALG00000014833 346.36 2788.01 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
53. MT-ND5 MT-ND5 344.74 2774.97
54. RPL32 ENSGALG00000027142 341.51 2748.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
55. RPL38 ENSGALG00000001465 341.51 2748.97 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
56. RPS7 ENSGALG00000016392 339.09 2729.49 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
57. ENO1 ENSGALG00000002377 334.25 2690.53 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
58. TCEB3 ENSGALG00000034625 331.82 2670.97 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
59. RPS15A ENSGALG00000006771 321.33 2586.53 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
60. RPS25 ENSGALG00000007699 314.87 2534.53 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
61. SNRPD1 ENSGALG00000041334 305.99 2463.05 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
62. RPS29 ENSGALG00000012229 304.37 2450.01 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
63. H3-IX H3-IX 303.57 2443.57
64. HMGN5 ENSGALG00000007131 303.57 2443.57 high mobility group nucleosome binding domain 5, transcript variant X1
65. RPS16 ENSGALG00000026490 295.49 2378.53 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
66. UBB ENSGALG00000004509 293.07 2359.05 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
67. CIRBP ENSGALG00000030918 283.38 2281.05 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
68. TMSB4X ENSGALG00000026383 277.73 2235.57 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
69. RPS3 ENSGALG00000017330 276.12 2222.61 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
70. RPL12 ENSGALG00000008806 271.27 2183.57 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
71. CRHOA CRHOA 268.85 2164.09
72. RPL35 ENSGALG00000035677 267.24 2151.13 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
73. RPS2 ENSGALG00000005490 264.81 2131.57 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
74. RPS11 ENSGALG00000017299 264.01 2125.13 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
75. ATP5G3 261.58 2105.57 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
76. HSPA8 ENSGALG00000006512 261.58 2105.57 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
77. RPL24 ENSGALG00000015339 259.16 2086.10 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
78. RPL7 ENSGALG00000035252 257.55 2073.14 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
79. RPLP2 ENSGALG00000034811 257.55 2073.14 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
80. STMN1 ENSGALG00000001475 249.47 2008.10 stathmin 1 [Source:NCBI gene;Acc:396057]
81. PSMC6 ENSGALG00000012408 242.21 1949.66 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
82. RPS13 ENSGALG00000006096 242.21 1949.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
83. SSR1 ENSGALG00000012798 235.75 1897.66 signal sequence receptor subunit 1 [Source:NCBI gene;Acc:420871]
84. ENSGALG00000028992 ENSGALG00000028992 233.33 1878.18
85. RPS20 ENSGALG00000014432 231.71 1865.14 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
86. RPL10A ENSGALG00000002644 225.25 1813.14 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
87. ANP32B ENSGALG00000037483 222.83 1793.66 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
88. ENSGALG00000018386 ENSGALG00000018386 222.83 1793.66
89. BLMH ENSGALG00000004259 220.41 1774.18 bleomycin hydrolase [Source:NCBI gene;Acc:395996]
90. PRDX1 ENSGALG00000010243 220.41 1774.18 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
91. PPIA ENSGALG00000028600 219.60 1767.66 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
92. EIF2S1 ENSGALG00000009565 217.99 1754.70 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
93. SLC25A6_1 ENSGALG00000016691 217.99 1754.70 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
94. EEF1B2 ENSGALG00000008590 216.37 1741.66 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
95. MYL12A ENSGALG00000014854 215.56 1735.14 myosin, light chain 12A, regulatory, non-sarcomeric [Source:NCBI gene;Acc:396284]
96. ENSGALG00000028649 ENSGALG00000028649 213.95 1722.18
97. SET ENSGALG00000004701 211.53 1702.70 SET nuclear proto-oncogene [Source:NCBI gene;Acc:417210]
98. MT-ND1 MT-ND1 206.68 1663.66
99. DYL1 ENSGALG00000007153 205.07 1650.70 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
100. RPS24 ENSGALG00000004871 199.42 1605.22 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA