Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_posterior_slice_1, section s15.

Sample reads: 124,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 6962.81 56044.09
2. EEF1A EEF1A 1683.84 13553.33
3. RPL35A ENSGALG00000007611, ENSGALG00000041230 1222.99 9843.92 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
4. RPS3A ENSGALG00000010077 938.38 7553.08 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
5. MT-ATP6 MT-ATP6 931.23 7495.53
6. RPS10 ENSGALG00000002813 868.12 6987.55 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPLP1 ENSGALG00000030878 819.29 6594.52 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
8. TMSB4X ENSGALG00000026383 785.95 6326.16 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
9. RPS8 ENSGALG00000010124 703.78 5664.77 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. RPS23 ENSGALG00000015617 659.72 5310.13 ribosomal protein S23
11. MT-CO1 MT-CO1 620.42 4993.80
12. RPL8 ENSGALG00000016232 613.28 4936.33 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
13. ENSGALG00000018384 ENSGALG00000018384 596.61 4802.15
14. RPS4 RPS4 543.02 4370.80
15. RPL7A ENSGALG00000003197 539.45 4342.07 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
16. RPS6 ENSGALG00000015082 521.59 4198.31 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
17. RPLP0 ENSGALG00000023294 516.82 4159.92 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
18. MT-CYB MT-CYB 513.25 4131.18
19. RPL27A ENSGALG00000005948 470.38 3786.12 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. RPL4 ENSGALG00000007711 469.19 3776.54 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
21. ENSGALG00000002696 ENSGALG00000002696 459.66 3699.83
22. GAPDH ENSGALG00000014442 453.71 3651.94 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
23. TXN ENSGALG00000015704 448.94 3613.55 thioredoxin [Source:NCBI gene;Acc:396437]
24. RPL26 RPL26 440.61 3546.50
25. AKAP12 ENSGALG00000036240 437.04 3517.76 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
26. RPL19 ENSGALG00000001658 434.65 3498.52 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
27. RPS21 ENSGALG00000005338 433.46 3488.95 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
28. gga-mir-3533 ENSGALG00000027736 432.27 3479.37 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
29. RPL27 ENSGALG00000002837 429.89 3460.21 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
30. RAN ENSGALG00000002569 417.98 3364.35 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
31. RPL23A ENSGALG00000003966 417.98 3364.35 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
32. RPS28 ENSGALG00000024398 406.07 3268.48 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
33. RPS12 ENSGALG00000013990 396.55 3191.86 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
34. MT-ND5 MT-ND5 395.36 3182.28
35. MDK ENSGALG00000008367 381.07 3067.26 midkine [Source:NCBI gene;Acc:423196]
36. RPL18A 366.78 2952.23 ribosomal protein L18a
37. RPL14 ENSGALG00000043379 359.63 2894.68 ribosomal protein L14
38. MT-ND3 MT-ND3 358.44 2885.11
39. RPL37 ENSGALG00000014833 357.25 2875.53 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
40. RPL5 ENSGALG00000005922 354.87 2856.37 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
41. RPS14 ENSGALG00000004588 354.87 2856.37 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
42. RPS15 ENSGALG00000015195 350.11 2818.06 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
43. RPL29 ENSGALG00000026978 348.91 2808.40 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
44. RPS15A ENSGALG00000006771 348.91 2808.40 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
45. RPL32 ENSGALG00000027142 347.72 2798.82 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
46. MT-ND4 MT-ND4 346.53 2789.24
47. RPL36AL ENSGALG00000004952 345.34 2779.66 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
48. RPL6 ENSGALG00000004818 342.96 2760.51 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
49. RPSA 337.01 2712.61 ribosomal protein SA
50. RPS11 ENSGALG00000017299 333.43 2683.80 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
51. RPS7 ENSGALG00000016392 333.43 2683.80 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
52. HMGN5 ENSGALG00000007131 323.91 2607.17 high mobility group nucleosome binding domain 5, transcript variant X1
53. RPL23 ENSGALG00000001634 322.72 2597.59 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
54. RPL38 ENSGALG00000001465 317.95 2559.20 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
55. RPL15 ENSGALG00000011290 312.00 2511.31 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
56. HMGB2 ENSGALG00000010745 310.81 2501.73 high mobility group box 2 [Source:NCBI gene;Acc:396482]
57. RPL13 ENSGALG00000006179 307.24 2472.99 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
58. RPL21 ENSGALG00000027035 304.85 2453.76 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. TCEB3 ENSGALG00000034625 296.52 2386.71 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
60. RPL35 ENSGALG00000035677 294.14 2367.55 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
61. ENSGALG00000018386 ENSGALG00000018386 290.56 2338.74
62. RPS29 ENSGALG00000012229 289.37 2329.16 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
63. RPS16 ENSGALG00000026490 288.18 2319.58 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
64. RPS25 ENSGALG00000007699 288.18 2319.58 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
65. PHB2 ENSGALG00000014567 283.42 2281.27 prohibitin 2 [Source:NCBI gene;Acc:771124]
66. CIRBP ENSGALG00000030918 282.23 2271.69 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
67. LECT1 LECT1 282.23 2271.69
68. CRHOA CRHOA 277.46 2233.29
69. SNRPD1 ENSGALG00000041334 272.70 2194.98 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
70. UBB ENSGALG00000004509 272.70 2194.98 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
71. PSMC6 ENSGALG00000012408 271.51 2185.40 proteasome 26S subunit, ATPase 6 [Source:NCBI gene;Acc:423586]
72. RPL24 ENSGALG00000015339 270.32 2175.82 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
73. RPL12 ENSGALG00000008806 267.94 2156.67 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
74. RPL10A ENSGALG00000002644 263.17 2118.27 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. HSP90B1 ENSGALG00000033789 259.60 2089.54 heat shock protein 90 beta family member 1 [Source:NCBI gene;Acc:374163]
76. ENO1 ENSGALG00000002377 252.46 2032.07 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. HSPA8 ENSGALG00000006512 241.74 1945.78 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
78. gga-mir-3527 gga-mir-3527 239.36 1926.62
79. ENSGALG00000028649 ENSGALG00000028649 236.98 1907.47
80. RPLP2 ENSGALG00000034811 232.21 1869.07 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
81. RPL7 ENSGALG00000035252 231.02 1859.49 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. H3-IX H3-IX 229.83 1849.92
83. EEF1D 228.64 1840.34 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. RPS20 ENSGALG00000014432 227.45 1830.76 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
85. PPIA ENSGALG00000028600 220.30 1773.21 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
86. RPS13 ENSGALG00000006096 219.11 1763.63 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
87. HBZ ENSGALG00000023740 217.92 1754.05 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
88. RPS24 ENSGALG00000004871 217.92 1754.05 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
89. RPS3 ENSGALG00000017330 217.92 1754.05 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
90. SLC25A6_1 ENSGALG00000016691 217.92 1754.05 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
91. STMN1 ENSGALG00000001475 217.92 1754.05 stathmin 1 [Source:NCBI gene;Acc:396057]
92. RPS2 ENSGALG00000005490 210.78 1696.58 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
93. RPL3 ENSGALG00000012172 209.59 1687.00 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. ENSGALG00000028992 ENSGALG00000028992 207.21 1667.85
95. RPL9 ENSGALG00000000150 197.68 1591.14 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
96. ANP32B ENSGALG00000037483 191.72 1543.17 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. NME2 ENSGALG00000002932 191.72 1543.17 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
98. HSP90AB1 ENSGALG00000010175 190.53 1533.59 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
99. PRDX1 ENSGALG00000010243 185.77 1495.27 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
100. EIF2S1 ENSGALG00000009565 184.58 1485.70 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA