Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s40.

Sample reads: 152,029. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3211.70 21128.49
2. ENSGALG00000018384 ENSGALG00000018384 2472.17 16263.42
3. ENSGALG00000018386 ENSGALG00000018386 2007.31 13205.29
4. EEF1A EEF1A 1986.18 13066.28
5. RPLP1 ENSGALG00000030878 1457.94 9591.20 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPS6 ENSGALG00000015082 1394.56 9174.25 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
7. RPS23 ENSGALG00000015617 1352.30 8896.24 ribosomal protein S23
8. MT-ATP6 MT-ATP6 1204.39 7923.20
9. RPLP0 ENSGALG00000023294 1056.48 6950.16 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 1035.35 6811.15 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS12 ENSGALG00000013990 1014.22 6672.15 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
12. RPS10 ENSGALG00000002813 993.09 6533.14 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
13. RPS8 ENSGALG00000010124 993.09 6533.14 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
14. RPL8 ENSGALG00000016232 971.96 6394.14 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. gga-mir-3527 gga-mir-3527 971.96 6394.14
16. GAPDH ENSGALG00000014442 950.83 6255.13 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. MT-CO1 MT-CO1 929.70 6116.12
18. RPSA 929.70 6116.12 ribosomal protein SA
19. RPL26 RPL26 908.57 5977.12
20. RPL19 ENSGALG00000001658 887.44 5838.11 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
21. RPL7A ENSGALG00000003197 866.31 5699.11 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
22. RPL27 ENSGALG00000002837 824.06 5421.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
23. RPL4 ENSGALG00000007711 802.93 5282.16 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
24. RPL23A ENSGALG00000003966 781.80 5143.15 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
25. RPL27A ENSGALG00000005948 781.80 5143.15 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
26. gga-mir-3533 ENSGALG00000027736 781.80 5143.15 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
27. RPL6 ENSGALG00000004818 760.67 5004.14 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
28. MT-CYB MT-CYB 739.54 4865.14
29. MT-ND3 MT-ND3 718.41 4726.13
30. RPS3A ENSGALG00000010077 718.41 4726.13 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
31. RPL32 ENSGALG00000027142 697.28 4587.13 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
32. RPS14 ENSGALG00000004588 697.28 4587.13 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
33. RPS21 ENSGALG00000005338 697.28 4587.13 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
34. RPS28 ENSGALG00000024398 676.15 4448.12 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
35. RPL38 ENSGALG00000001465 655.02 4309.11 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
36. RPS11 ENSGALG00000017299 655.02 4309.11 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
37. ENO1 ENSGALG00000002377 633.89 4170.11 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
38. GNB2L1 ENSGALG00000000122 633.89 4170.11 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
39. RPS2 ENSGALG00000005490 633.89 4170.11 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
40. RPS15 ENSGALG00000015195 612.76 4031.10 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
41. ENSGALG00000002696 ENSGALG00000002696 591.63 3892.10
42. RPL21 ENSGALG00000027035 591.63 3892.10 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
43. RPL23 ENSGALG00000001634 591.63 3892.10 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
44. RPL24 ENSGALG00000015339 591.63 3892.10 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
45. RPS4 RPS4 591.63 3892.10
46. TCEB3 ENSGALG00000034625 591.63 3892.10 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
47. RPS29 ENSGALG00000012229 549.37 3614.09 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
48. RPS3 ENSGALG00000017330 549.37 3614.09 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
49. RPL18A 528.24 3475.08 ribosomal protein L18a
50. CRHOA CRHOA 507.11 3336.07
51. MT-ND4 MT-ND4 507.11 3336.07
52. RPL29 ENSGALG00000026978 507.11 3336.07 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
53. RPL36AL ENSGALG00000004952 507.11 3336.07 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
54. RPL5 ENSGALG00000005922 507.11 3336.07 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
55. RPS16 ENSGALG00000026490 507.11 3336.07 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
56. RPS20 ENSGALG00000014432 507.11 3336.07 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
57. ENSGALG00000028992 ENSGALG00000028992 485.98 3197.07
58. RPL12 ENSGALG00000008806 485.98 3197.07 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
59. RPL7 ENSGALG00000035252 464.85 3058.06 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
60. TMSB4X ENSGALG00000026383 464.85 3058.06 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
61. MDK ENSGALG00000008367 443.72 2919.06 midkine [Source:NCBI gene;Acc:423196]
62. RPLP2 ENSGALG00000034811 443.72 2919.06 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
63. RPS15A ENSGALG00000006771 443.72 2919.06 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
64. EEF1B2 ENSGALG00000008590 422.59 2780.05 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
65. MT-ND6 MT-ND6 422.59 2780.05
66. NME2 ENSGALG00000002932 422.59 2780.05 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
67. PPIA ENSGALG00000028600 422.59 2780.05 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
68. RPL10A ENSGALG00000002644 422.59 2780.05 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. RPL3 ENSGALG00000012172 422.59 2780.05 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
70. NCL ENSGALG00000032930 380.33 2502.04 nucleolin [Source:NCBI gene;Acc:396201]
71. RPL14 ENSGALG00000043379 380.33 2502.04 ribosomal protein L14
72. RPS13 ENSGALG00000006096 380.33 2502.04 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
73. RPS17 ENSGALG00000002157 380.33 2502.04 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. RPS25 ENSGALG00000007699 380.33 2502.04 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
75. EEF2 ENSGALG00000033884 359.20 2363.03 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
76. MT-ND5 MT-ND5 359.20 2363.03
77. RPL13 ENSGALG00000006179 359.20 2363.03 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
78. RPL15 ENSGALG00000011290 359.20 2363.03 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
79. RPL35 ENSGALG00000035677 359.20 2363.03 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
80. TPT1 ENSGALG00000028872 359.20 2363.03 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
81. UBB ENSGALG00000004509 359.20 2363.03 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
82. FTH FTH 338.07 2224.03
83. STMN1 ENSGALG00000001475 338.07 2224.03 stathmin 1 [Source:NCBI gene;Acc:396057]
84. RPS7 ENSGALG00000016392 316.94 2085.02 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
85. RPL36 ENSGALG00000000474 295.81 1946.02 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
86. SLC25A3 ENSGALG00000011514 295.81 1946.02 solute carrier family 25 member 3 [Source:NCBI gene;Acc:417924]
87. SPARC ENSGALG00000004184 295.81 1946.02 secreted protein acidic and cysteine rich [Source:NCBI gene;Acc:386571]
88. EEF1D 274.69 1807.08 eukaryotic translation elongation factor 1 delta, transcript variant X13
89. HSP90AA1 ENSGALG00000033212 274.69 1807.08 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
90. MT-ND1 MT-ND1 274.69 1807.08
91. PNRC1 ENSGALG00000015780 274.69 1807.08 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
92. RPL9 ENSGALG00000000150 274.69 1807.08 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
93. RPS24 ENSGALG00000004871 274.69 1807.08 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
94. RPS27A ENSGALG00000036790 274.69 1807.08 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
95. ATP5L ENSGALG00000006899 253.56 1668.07 ATP synthase, H+ transporting, mitochondrial Fo complex subunit G
96. RPL22 ENSGALG00000000719 253.56 1668.07 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
97. SLC25A6_1 ENSGALG00000016691 253.56 1668.07 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. VIMENTIN VIMENTIN 253.56 1668.07
99. ZNF593 ENSGALG00000000542 253.56 1668.07 zinc finger protein 593 [Source:NCBI gene;Acc:419549]
100. ANP32B ENSGALG00000037483 232.43 1529.06 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA