Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s38.

Sample reads: 152,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4739.44 31130.06
2. EEF1A EEF1A 2182.19 14333.28
3. ENSGALG00000018384 ENSGALG00000018384 1704.84 11197.90
4. RPS23 ENSGALG00000015617 1670.74 10973.92 ribosomal protein S23
5. RPLP1 ENSGALG00000030878 1585.50 10414.04 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPS10 ENSGALG00000002813 1449.11 9518.19 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. MT-ATP6 MT-ATP6 1432.06 9406.20
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 1432.06 9406.20 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS6 ENSGALG00000015082 1363.87 8958.31 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
10. RPS8 ENSGALG00000010124 1244.53 8174.45 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. GAPDH ENSGALG00000014442 1125.19 7390.59 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. ENSGALG00000018386 ENSGALG00000018386 1074.05 7054.68
13. RPSA 1074.05 7054.68 ribosomal protein SA
14. RPL27A ENSGALG00000005948 1039.95 6830.70 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
15. RPLP0 ENSGALG00000023294 1039.95 6830.70 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
16. gga-mir-3527 gga-mir-3527 1039.95 6830.70
17. RPL32 ENSGALG00000027142 988.80 6494.73 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
18. RPL7A ENSGALG00000003197 886.51 5822.86 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
19. MT-CO1 MT-CO1 852.42 5598.95
20. MT-CYB MT-CYB 852.42 5598.95
21. RPL27 ENSGALG00000002837 852.42 5598.95 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
22. RPS12 ENSGALG00000013990 852.42 5598.95 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
23. RPL8 ENSGALG00000016232 835.37 5486.96 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
24. RPS29 ENSGALG00000012229 818.32 5374.97 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
25. MT-ND3 MT-ND3 801.27 5262.98
26. RPS3A ENSGALG00000010077 801.27 5262.98 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
27. RPL6 ENSGALG00000004818 767.18 5039.07 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
28. RPL23A ENSGALG00000003966 750.13 4927.08 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
29. RPS14 ENSGALG00000004588 750.13 4927.08 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
30. RPS21 ENSGALG00000005338 750.13 4927.08 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
31. RPL19 ENSGALG00000001658 733.08 4815.09 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
32. RPL4 ENSGALG00000007711 733.08 4815.09 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
33. RPS2 ENSGALG00000005490 733.08 4815.09 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
34. RPS4 RPS4 716.03 4703.10
35. RPL26 RPL26 698.98 4591.11
36. MT-ND6 MT-ND6 647.84 4255.21
37. RPL5 ENSGALG00000005922 647.84 4255.21 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
38. RPS15 ENSGALG00000015195 647.84 4255.21 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
39. RPL29 ENSGALG00000026978 630.79 4143.22 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPS20 ENSGALG00000014432 630.79 4143.22 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. GNB2L1 ENSGALG00000000122 596.69 3919.24 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
42. RPL23 ENSGALG00000001634 596.69 3919.24 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
43. RPS11 ENSGALG00000017299 596.69 3919.24 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
44. gga-mir-3533 ENSGALG00000027736 596.69 3919.24 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
45. ENSGALG00000002696 ENSGALG00000002696 579.64 3807.25
46. RPL14 ENSGALG00000043379 579.64 3807.25 ribosomal protein L14
47. RPS25 ENSGALG00000007699 579.64 3807.25 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
48. RPS28 ENSGALG00000024398 579.64 3807.25 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
49. RPS7 ENSGALG00000016392 579.64 3807.25 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
50. MT-ND4 MT-ND4 562.60 3695.33
51. RPL12 ENSGALG00000008806 545.55 3583.34 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
52. RPL35 ENSGALG00000035677 545.55 3583.34 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
53. ENO1 ENSGALG00000002377 528.50 3471.35 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
54. RPL15 ENSGALG00000011290 528.50 3471.35 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
55. MDK ENSGALG00000008367 511.45 3359.36 midkine [Source:NCBI gene;Acc:423196]
56. RPL13 ENSGALG00000006179 511.45 3359.36 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
57. RPLP2 ENSGALG00000034811 511.45 3359.36 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
58. RPS13 ENSGALG00000006096 511.45 3359.36 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
59. RPS15A ENSGALG00000006771 511.45 3359.36 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
60. RPS16 ENSGALG00000026490 511.45 3359.36 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
61. PPIA ENSGALG00000028600 494.40 3247.37 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
62. RPL18A 494.40 3247.37 ribosomal protein L18a
63. RPL24 ENSGALG00000015339 494.40 3247.37 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
64. RPL7 ENSGALG00000035252 477.35 3135.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
65. RPS27A ENSGALG00000036790 477.35 3135.38 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
66. EEF1B2 ENSGALG00000008590 460.31 3023.45 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
67. ENSGALG00000028992 ENSGALG00000028992 460.31 3023.45
68. RPL36AL ENSGALG00000004952 460.31 3023.45 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
69. SLC25A6_1 ENSGALG00000016691 460.31 3023.45 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
70. TMSB4X ENSGALG00000026383 460.31 3023.45 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
71. CRHOA CRHOA 443.26 2911.46
72. RPL37 ENSGALG00000014833 443.26 2911.46 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. RPL36 ENSGALG00000000474 426.21 2799.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
74. RPL38 ENSGALG00000001465 426.21 2799.48 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. RPS24 ENSGALG00000004871 426.21 2799.48 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
76. UBB ENSGALG00000004509 426.21 2799.48 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
77. MT-ND5 MT-ND5 409.16 2687.49
78. RPL10A ENSGALG00000002644 409.16 2687.49 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. RPL21 ENSGALG00000027035 409.16 2687.49 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
80. TPT1 ENSGALG00000028872 392.11 2575.50 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
81. NME2 ENSGALG00000002932 375.06 2463.51 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
82. RPL3 ENSGALG00000012172 375.06 2463.51 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
83. STMN1 ENSGALG00000001475 375.06 2463.51 stathmin 1 [Source:NCBI gene;Acc:396057]
84. TCEB3 ENSGALG00000034625 375.06 2463.51 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
85. EEF1D 340.97 2239.59 eukaryotic translation elongation factor 1 delta, transcript variant X13
86. RPL31 ENSGALG00000016775 340.97 2239.59 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
87. RPS17 ENSGALG00000002157 340.97 2239.59 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
88. RPL22 ENSGALG00000000719 323.92 2127.60 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
89. ANP32B ENSGALG00000037483 306.87 2015.61 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
90. RPL22L1 ENSGALG00000009312 306.87 2015.61 ribosomal protein L22 like 1 [Source:NCBI gene;Acc:100858296]
91. RPS3 ENSGALG00000017330 306.87 2015.61 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
92. TXN ENSGALG00000015704 306.87 2015.61 thioredoxin [Source:NCBI gene;Acc:396437]
93. NUCKS1 ENSGALG00000000708 289.82 1903.62 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
94. ATP5G3 272.77 1791.64 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
95. HNRNPA3 ENSGALG00000009250 272.77 1791.64 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
96. MT-ND2 MT-ND2 272.77 1791.64
97. RPL39 ENSGALG00000008620 272.77 1791.64 ribosomal protein L39 [Source:NCBI gene;Acc:374132]
98. DSTN ENSGALG00000008667 255.73 1679.71 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
99. EEF2 ENSGALG00000033884 255.73 1679.71 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
100. MT-ND1 MT-ND1 255.73 1679.71
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA