Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s31.

Sample reads: 152,016. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4513.79 29699.19
2. HBZ ENSGALG00000023740 3948.40 25979.12 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. HBE 2525.57 16617.39 hemoglobin subunit epsilon
4. HBG1 HBG1 2027.93 13343.08
5. MT-ATP6 MT-ATP6 1745.24 11483.08
6. RPLP1 ENSGALG00000030878 1453.20 9561.56 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. EEF1A EEF1A 1406.47 9254.09
8. RPS23 ENSGALG00000015617 1121.44 7378.69 ribosomal protein S23
9. gga-mir-3527 gga-mir-3527 1114.43 7332.57
10. RPS10 ENSGALG00000002813 1093.40 7194.20 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
11. RPLP0 ENSGALG00000023294 1018.64 6702.30 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
12. RPS6 ENSGALG00000015082 988.27 6502.48 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
13. gga-mir-3533 ENSGALG00000027736 911.17 5995.19 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPL35A ENSGALG00000007611, ENSGALG00000041230 878.46 5779.97 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
15. MT-CYB MT-CYB 876.12 5764.57
16. GAPDH ENSGALG00000014442 866.78 5703.12 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
17. RPS3A ENSGALG00000010077 855.10 5626.26 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
18. RPL8 ENSGALG00000016232 850.42 5595.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. RPSA 843.42 5549.41 ribosomal protein SA
20. RPS8 ENSGALG00000010124 841.08 5534.02 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
21. RPS15 ENSGALG00000015195 827.06 5441.77 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
22. ENSGALG00000018384 ENSGALG00000018384 822.39 5411.04
23. RPL19 ENSGALG00000001658 822.39 5411.04 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. RPL32 ENSGALG00000027142 822.39 5411.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
25. RPS12 ENSGALG00000013990 810.71 5334.19 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
26. RPL27A ENSGALG00000005948 787.34 5180.43 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. MT-CO1 MT-CO1 761.64 5011.33
28. RPL27 ENSGALG00000002837 756.97 4980.60 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
29. RPL26 RPL26 712.58 4688.53
30. RPS29 ENSGALG00000012229 712.58 4688.53 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
31. RPS28 ENSGALG00000024398 707.91 4657.81 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
32. ENSGALG00000018386 ENSGALG00000018386 698.56 4596.29
33. MDK ENSGALG00000008367 675.20 4442.58 midkine [Source:NCBI gene;Acc:423196]
34. RPS2 ENSGALG00000005490 663.52 4365.73 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
35. RPS14 ENSGALG00000004588 658.85 4335.01 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
36. RPL23A ENSGALG00000003966 642.49 4227.36 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
37. RPL4 ENSGALG00000007711 642.49 4227.36 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
38. RPL7A ENSGALG00000003197 640.15 4211.97 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
39. RPS21 ENSGALG00000005338 635.48 4181.24 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
40. MT-ND3 MT-ND3 630.81 4150.51
41. RPL21 ENSGALG00000027035 626.14 4119.79 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
42. RPS4 RPS4 626.14 4119.79
43. RPL29 ENSGALG00000026978 621.46 4088.99 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
44. RPS16 ENSGALG00000026490 591.09 3889.17 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
45. RPL23 ENSGALG00000001634 588.76 3873.84 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
46. RPL13 ENSGALG00000006179 584.08 3843.05 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
47. RPL36AL ENSGALG00000004952 577.07 3796.92 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
48. RPS15A ENSGALG00000006771 563.06 3704.74 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
49. RPL24 ENSGALG00000015339 560.72 3689.35 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
50. GNB2L1 ENSGALG00000000122 549.04 3612.50 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
51. RPS11 ENSGALG00000017299 544.36 3581.70 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
52. RPL38 ENSGALG00000001465 539.69 3550.98 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
53. RPL18A 532.68 3504.85 ribosomal protein L18a
54. RPL6 ENSGALG00000004818 530.35 3489.52 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. NME2 ENSGALG00000002932 528.01 3474.12 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
56. RPS27A ENSGALG00000036790 528.01 3474.12 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. ENSGALG00000028992 ENSGALG00000028992 509.32 3351.15
58. RPL35 ENSGALG00000035677 506.98 3335.75 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
59. RPL5 ENSGALG00000005922 506.98 3335.75 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
60. RPS20 ENSGALG00000014432 495.30 3258.90 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
61. MT-ND5 MT-ND5 485.96 3197.45
62. FTH FTH 476.61 3135.93
63. MT-ND4 MT-ND4 476.61 3135.93
64. RPL12 ENSGALG00000008806 469.60 3089.81 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
65. UBB ENSGALG00000004509 464.93 3059.08 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
66. ENSGALG00000002696 ENSGALG00000002696 448.58 2951.50
67. RPLP2 ENSGALG00000034811 446.24 2936.11 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
68. RPS25 ENSGALG00000007699 441.57 2905.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
69. PPIA ENSGALG00000028600 439.23 2889.98 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
70. RPL7 ENSGALG00000035252 436.89 2874.59 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
71. RPL15 ENSGALG00000011290 427.55 2813.13 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
72. RPS7 ENSGALG00000016392 413.53 2720.89 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
73. RPS17 ENSGALG00000002157 408.86 2690.16 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
74. RPL14 ENSGALG00000043379 401.85 2644.04 ribosomal protein L14
75. RPS13 ENSGALG00000006096 394.84 2597.91 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
76. ENO1 ENSGALG00000002377 369.14 2428.81 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. MT-ND1 MT-ND1 369.14 2428.81
78. MT-ND6 MT-ND6 369.14 2428.81
79. TMSB4X ENSGALG00000026383 364.47 2398.09 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
80. RPL10A ENSGALG00000002644 359.79 2367.29 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. RPL36 ENSGALG00000000474 352.79 2321.24 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
82. EEF1D 329.42 2167.47 eukaryotic translation elongation factor 1 delta, transcript variant X13
83. TCEB3 ENSGALG00000034625 327.09 2152.14 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
84. RPL37 ENSGALG00000014833 324.75 2136.74 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
85. RPL3 ENSGALG00000012172 320.08 2106.02 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
86. SNRPD1 ENSGALG00000041334 315.40 2075.22 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
87. ATP5G3 313.07 2059.89 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. TXN ENSGALG00000015704 306.06 2013.77 thioredoxin [Source:NCBI gene;Acc:396437]
89. EEF2 ENSGALG00000033884 294.38 1936.92 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
90. RPL31 ENSGALG00000016775 289.70 1906.13 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
91. RPS3 ENSGALG00000017330 289.70 1906.13 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
92. NUCKS1 ENSGALG00000000708 280.36 1844.67 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
93. TPT1 ENSGALG00000028872 280.36 1844.67 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
94. RPS24 ENSGALG00000004871 278.02 1829.28 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
95. GAL10 GAL10 261.67 1721.70
96. HSPA8 ENSGALG00000006512 261.67 1721.70 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
97. ENSGALG00000022570 ENSGALG00000022570 259.33 1706.30
98. CRHOA CRHOA 257.00 1690.97
99. EEF1B2 ENSGALG00000008590 254.66 1675.58 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
100. ANP32B ENSGALG00000037483 242.98 1598.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA