Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s30.

Sample reads: 151,962. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3479.88 22905.79
2. HBZ ENSGALG00000023740 3111.42 20480.45 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
3. HBE 2438.84 16053.30 hemoglobin subunit epsilon
4. HBG1 HBG1 2062.58 13576.62
5. EEF1A EEF1A 1602.50 10548.21
6. RPLP1 ENSGALG00000030878 1594.70 10496.87 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
7. MT-ATP6 MT-ATP6 1432.89 9431.78
8. RPS10 ENSGALG00000002813 1208.70 7956.09 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. RPS23 ENSGALG00000015617 1165.81 7673.77 ribosomal protein S23
10. gga-mir-3527 gga-mir-3527 1158.01 7622.43
11. ENSGALG00000018384 ENSGALG00000018384 1144.36 7532.58
12. RPLP0 ENSGALG00000023294 1056.63 6955.11 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
13. RPL19 ENSGALG00000001658 984.50 6480.32 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
14. gga-mir-3533 ENSGALG00000027736 910.42 5992.70 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
15. MT-CYB MT-CYB 883.13 5813.07
16. RPS3A ENSGALG00000010077 883.13 5813.07 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
17. RPS6 ENSGALG00000015082 867.53 5710.39 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. GAPDH ENSGALG00000014442 865.58 5697.55 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
19. RPS29 ENSGALG00000012229 851.94 5607.77 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
20. RPL35A ENSGALG00000007611, ENSGALG00000041230 848.04 5582.10 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
21. RPS8 ENSGALG00000010124 840.24 5530.75 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
22. RPL27A ENSGALG00000005948 832.44 5479.41 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPL32 ENSGALG00000027142 826.59 5440.90 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
24. RPS12 ENSGALG00000013990 803.20 5286.94 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
25. RPS15 ENSGALG00000015195 803.20 5286.94 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
26. RPSA 766.16 5043.13 ribosomal protein SA
27. RPL4 ENSGALG00000007711 758.36 4991.79 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
28. MT-CO1 MT-CO1 754.46 4966.12
29. RPS11 ENSGALG00000017299 744.71 4901.94 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
30. RPL26 RPL26 731.07 4812.16
31. RPL27 ENSGALG00000002837 717.42 4722.31 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
32. RPL8 ENSGALG00000016232 715.47 4709.47 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
33. RPS28 ENSGALG00000024398 701.82 4619.62 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
34. RPS14 ENSGALG00000004588 668.68 4401.49 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
35. ENSGALG00000018386 ENSGALG00000018386 662.83 4362.98
36. RPL23A ENSGALG00000003966 660.88 4350.14 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
37. RPS21 ENSGALG00000005338 660.88 4350.14 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
38. RPS2 ENSGALG00000005490 656.98 4324.47 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
39. RPL7A ENSGALG00000003197 651.14 4286.03 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
40. RPS4 RPS4 645.29 4247.52
41. RPL13 ENSGALG00000006179 619.94 4080.66 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
42. RPL38 ENSGALG00000001465 614.10 4042.22 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
43. MT-ND3 MT-ND3 600.45 3952.37
44. GNB2L1 ENSGALG00000000122 598.50 3939.54 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
45. RPL12 ENSGALG00000008806 596.55 3926.70 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
46. GAL10 GAL10 592.65 3901.03
47. MT-ND5 MT-ND5 586.80 3862.52
48. RPL24 ENSGALG00000015339 557.56 3670.05 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
49. RPL15 ENSGALG00000011290 555.61 3657.22 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
50. RPS15A ENSGALG00000006771 551.71 3631.55 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
51. RPL29 ENSGALG00000026978 549.76 3618.71 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
52. RPL35 ENSGALG00000035677 549.76 3618.71 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
53. RPS20 ENSGALG00000014432 543.91 3580.21 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. RPS27A ENSGALG00000036790 543.91 3580.21 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
55. MDK ENSGALG00000008367 538.06 3541.70 midkine [Source:NCBI gene;Acc:423196]
56. PPIA ENSGALG00000028600 538.06 3541.70 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
57. RPL5 ENSGALG00000005922 538.06 3541.70 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
58. RPL36AL ENSGALG00000004952 534.17 3516.09 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
59. RPS16 ENSGALG00000026490 524.42 3451.92 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. RPL6 ENSGALG00000004818 512.72 3374.90 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
61. ENSGALG00000002696 ENSGALG00000002696 502.97 3310.72
62. RPL18A 479.58 3156.76 ribosomal protein L18a
63. FTH FTH 475.68 3131.09
64. NME2 ENSGALG00000002932 469.83 3092.59 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
65. RPL23 ENSGALG00000001634 463.98 3054.08 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
66. ENSGALG00000028992 ENSGALG00000028992 462.03 3041.24
67. RPS13 ENSGALG00000006096 462.03 3041.24 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
68. RPL21 ENSGALG00000027035 450.34 2964.30 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
69. RPLP2 ENSGALG00000034811 442.54 2912.95 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
70. RPS7 ENSGALG00000016392 432.79 2848.77 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
71. RPL36 ENSGALG00000000474 426.94 2810.27 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. UBB ENSGALG00000004509 424.99 2797.43 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
73. TCEB3 ENSGALG00000034625 409.40 2694.81 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPL14 ENSGALG00000043379 393.80 2592.13 ribosomal protein L14
75. RPL37 ENSGALG00000014833 393.80 2592.13 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
76. RPL10A ENSGALG00000002644 386.00 2540.79 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. MT-ND4 MT-ND4 384.05 2527.95
78. RPS25 ENSGALG00000007699 382.10 2515.12 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
79. RPS17 ENSGALG00000002157 378.20 2489.44 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
80. MT-ND1 MT-ND1 374.31 2463.84
81. RPL7 ENSGALG00000035252 370.41 2438.17 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
82. TXN ENSGALG00000015704 370.41 2438.17 thioredoxin [Source:NCBI gene;Acc:396437]
83. RPL3 ENSGALG00000012172 364.56 2399.66 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
84. TMSB4X ENSGALG00000026383 364.56 2399.66 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
85. ENO1 ENSGALG00000002377 358.71 2361.15 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
86. EEF1D 347.01 2284.14 eukaryotic translation elongation factor 1 delta, transcript variant X13
87. ATP5G3 335.32 2207.19 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
88. CHCHD2 ENSGALG00000002495 323.62 2130.18 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
89. CRHOA CRHOA 317.77 2091.67
90. RPS3 ENSGALG00000017330 313.87 2066.00 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
91. HSPA8 ENSGALG00000006512 311.92 2053.17 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. TPT1 ENSGALG00000028872 309.97 2040.33 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
93. SNRPD1 ENSGALG00000041334 288.53 1899.21 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
94. RPS24 ENSGALG00000004871 286.58 1886.37 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
95. MT-ND6 MT-ND6 276.83 1822.19
96. STMN1 ENSGALG00000001475 261.23 1719.51 stathmin 1 [Source:NCBI gene;Acc:396057]
97. EEF2 ENSGALG00000033884 257.34 1693.90 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
98. RPL31 ENSGALG00000016775 257.34 1693.90 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
99. SLC25A6_1 ENSGALG00000016691 255.39 1681.07 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. COX7C ENSGALG00000027963 251.49 1655.40 cytochrome c oxidase subunit 7C [Source:HGNC Symbol;Acc:HGNC:2292]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA