Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s28.

Sample reads: 151,630. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. ENSGALG00000018384 ENSGALG00000018384 4784.26 31555.41
2. MT-CO3 MT-CO3 3347.67 22080.14
3. ENSGALG00000018386 ENSGALG00000018386 2144.13 14141.98
4. MT-ATP6 MT-ATP6 1859.68 12265.84
5. RPLP1 ENSGALG00000030878 1438.98 9491.04 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. EEF1A EEF1A 1407.91 9286.11
7. RPL35A ENSGALG00000007611, ENSGALG00000041230 1250.15 8245.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
8. gga-mir-3527 gga-mir-3527 1239.39 8174.61
9. RPS23 ENSGALG00000015617 1215.49 8016.97 ribosomal protein S23
10. RPLP0 ENSGALG00000023294 1214.29 8009.06 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
11. RPS10 ENSGALG00000002813 1073.26 7078.87 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
12. RPS6 ENSGALG00000015082 1027.84 6779.30 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
13. MT-CO1 MT-CO1 946.57 6243.27
14. MT-ND5 MT-ND5 945.38 6235.42
15. GAPDH ENSGALG00000014442 915.50 6038.34 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
16. RPL32 ENSGALG00000027142 913.11 6022.57 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
17. MT-CYB MT-CYB 899.96 5935.84
18. gga-mir-3533 ENSGALG00000027736 849.76 5604.74 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
19. RPS8 ENSGALG00000010124 829.45 5470.78 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPSA 823.47 5431.34 ribosomal protein SA
21. RPS29 ENSGALG00000012229 810.32 5344.61 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
22. RPL19 ENSGALG00000001658 794.79 5242.17 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
23. RPL4 ENSGALG00000007711 787.62 5194.88 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
24. RPS3A ENSGALG00000010077 787.62 5194.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
25. RPL8 ENSGALG00000016232 779.25 5139.68 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
26. RPL27 ENSGALG00000002837 773.27 5100.24 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
27. RPS12 ENSGALG00000013990 757.74 4997.80 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
28. RPS15 ENSGALG00000015195 720.69 4753.44 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
29. RPS28 ENSGALG00000024398 720.69 4753.44 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
30. RPL26 RPL26 709.93 4682.47
31. RPL27A ENSGALG00000005948 684.83 4516.91 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
32. RPS11 ENSGALG00000017299 674.08 4446.01 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPS14 ENSGALG00000004588 659.73 4351.36 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
34. RPL7A ENSGALG00000003197 658.54 4343.51 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
35. RPS4 RPS4 654.95 4319.84
36. PPIA ENSGALG00000028600 643.00 4241.02 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
37. GNB2L1 ENSGALG00000000122 639.42 4217.40 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
38. RPS21 ENSGALG00000005338 638.22 4209.49 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
39. RPL23A ENSGALG00000003966 617.90 4075.47 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
40. RPL29 ENSGALG00000026978 592.80 3909.91 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
41. RPS27A ENSGALG00000036790 588.02 3878.39 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
42. RPS2 ENSGALG00000005490 584.44 3854.77 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
43. MDK ENSGALG00000008367 583.24 3846.86 midkine [Source:NCBI gene;Acc:423196]
44. RPL21 ENSGALG00000027035 567.71 3744.43 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
45. RPL23 ENSGALG00000001634 567.71 3744.43 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
46. RPLP2 ENSGALG00000034811 561.73 3704.99 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
47. RPL24 ENSGALG00000015339 559.34 3689.22 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
48. MT-ND6 MT-ND6 541.41 3570.96
49. RPS15A ENSGALG00000006771 537.83 3547.35 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. RPL38 ENSGALG00000001465 530.65 3499.99 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
51. NME2 ENSGALG00000002932 528.26 3484.23 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
52. RPL12 ENSGALG00000008806 517.51 3413.33 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
53. RPS20 ENSGALG00000014432 512.73 3381.80 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
54. RPS16 ENSGALG00000026490 501.97 3310.83 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
55. RPL6 ENSGALG00000004818 494.80 3263.54 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
56. RPL36AL ENSGALG00000004952 490.02 3232.01 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
57. MT-ND1 MT-ND1 482.85 3184.72
58. MT-ND3 MT-ND3 472.09 3113.75
59. RPL13 ENSGALG00000006179 469.70 3097.99 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
60. ENSGALG00000002696 ENSGALG00000002696 468.51 3090.14
61. MT-ND4 MT-ND4 468.51 3090.14
62. RPL18A 462.53 3050.70 ribosomal protein L18a
63. GAL10 GAL10 461.34 3042.85
64. RPS13 ENSGALG00000006096 454.16 2995.49 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. RPL14 ENSGALG00000043379 448.19 2956.11 ribosomal protein L14
66. RPL15 ENSGALG00000011290 427.87 2822.09 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
67. RPS7 ENSGALG00000016392 418.31 2759.04 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
68. RPL5 ENSGALG00000005922 417.11 2751.12 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
69. HBZ ENSGALG00000023740 412.33 2719.59 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
70. RPL35 ENSGALG00000035677 412.33 2719.59 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
71. HBE 409.94 2703.83 hemoglobin subunit epsilon
72. TMSB4X ENSGALG00000026383 394.41 2601.40 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
73. TCEB3 ENSGALG00000034625 384.84 2538.28 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. RPS17 ENSGALG00000002157 378.87 2498.90 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
75. RPS25 ENSGALG00000007699 376.48 2483.14 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
76. EEF1D 375.28 2475.22 eukaryotic translation elongation factor 1 delta, transcript variant X13
77. RPL7 ENSGALG00000035252 374.09 2467.38 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
78. RPL10A ENSGALG00000002644 371.70 2451.61 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. ENSGALG00000028992 ENSGALG00000028992 370.50 2443.70
80. MT-ND2 MT-ND2 364.53 2404.32
81. RPL36 ENSGALG00000000474 359.75 2372.79 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
82. ENO1 ENSGALG00000002377 346.60 2286.06 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. FTH FTH 339.43 2238.77
84. UBB ENSGALG00000004509 331.06 2183.56 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
85. HBG1 HBG1 329.87 2175.71
86. RPL37 ENSGALG00000014833 329.87 2175.71 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
87. RPS3 ENSGALG00000017330 327.48 2159.95 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
88. RPL3 ENSGALG00000012172 326.28 2152.04 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
89. STMN1 ENSGALG00000001475 314.33 2073.22 stathmin 1 [Source:NCBI gene;Acc:396057]
90. TXN ENSGALG00000015704 314.33 2073.22 thioredoxin [Source:NCBI gene;Acc:396437]
91. ATP5G3 307.16 2025.93 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
92. SNRPD1 ENSGALG00000041334 301.18 1986.48 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
93. SLC25A6_1 ENSGALG00000016691 294.01 1939.19 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
94. CHCHD2 ENSGALG00000002495 286.84 1891.90 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
95. NUCKS1 ENSGALG00000000708 280.86 1852.46 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
96. ANP32B ENSGALG00000037483 278.47 1836.70 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
97. HSPA8 ENSGALG00000006512 274.89 1813.08 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
98. EEF1B2 ENSGALG00000008590 267.72 1765.79 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
99. TPT1 ENSGALG00000028872 267.72 1765.79 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
100. RPS24 ENSGALG00000004871 265.33 1750.03 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA