Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s26.

Sample reads: 151,782. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3079.70 20291.10
2. ENSGALG00000018384 ENSGALG00000018384 2413.61 15902.46
3. EEF1A EEF1A 1691.40 11144.06
4. RPS23 ENSGALG00000015617 1637.14 10786.56 ribosomal protein S23
5. RPLP1 ENSGALG00000030878 1601.59 10552.33 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. MT-ATP6 MT-ATP6 1412.62 9307.27
7. RPLP0 ENSGALG00000023294 1274.16 8395.01 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPS10 ENSGALG00000002813 1238.61 8160.78 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
9. GAPDH ENSGALG00000014442 1137.58 7495.13 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 1053.38 6940.36 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. RPS6 ENSGALG00000015082 1036.54 6829.41 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
12. RPSA 1012.22 6669.17 ribosomal protein SA
13. gga-mir-3533 ENSGALG00000027736 997.25 6570.54 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
14. RPL8 ENSGALG00000016232 916.80 6040.48 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
15. gga-mir-3527 gga-mir-3527 911.19 6003.52
16. RPS12 ENSGALG00000013990 907.44 5978.81 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
17. ENSGALG00000018386 ENSGALG00000018386 883.12 5818.58
18. RPS3A ENSGALG00000010077 866.28 5707.62 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
19. RPS8 ENSGALG00000010124 853.18 5621.31 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
20. RPL27A ENSGALG00000005948 841.96 5547.39 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPL4 ENSGALG00000007711 828.86 5461.08 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
22. RPL7A ENSGALG00000003197 821.38 5411.79 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPS15 ENSGALG00000015195 815.76 5374.77 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
24. RPL27 ENSGALG00000002837 806.41 5313.16 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
25. RPS28 ENSGALG00000024398 795.18 5239.17 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
26. RPL32 ENSGALG00000027142 789.57 5202.21 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
27. RPS29 ENSGALG00000012229 782.09 5152.93 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
28. MDK ENSGALG00000008367 772.73 5091.26 midkine [Source:NCBI gene;Acc:423196]
29. RPS2 ENSGALG00000005490 752.15 4955.66 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
30. RPS14 ENSGALG00000004588 733.44 4832.39 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
31. RPS4 RPS4 709.12 4672.15
32. RPS11 ENSGALG00000017299 707.25 4659.83 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
33. RPL26 RPL26 705.37 4647.44
34. MT-CYB MT-CYB 701.63 4622.80
35. MT-CO1 MT-CO1 697.89 4598.16
36. RPL19 ENSGALG00000001658 696.02 4585.84 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
37. GNB2L1 ENSGALG00000000122 694.15 4573.52 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
38. RPL21 ENSGALG00000027035 652.99 4302.33 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
39. RPL13 ENSGALG00000006179 636.15 4191.38 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
40. RPL36AL ENSGALG00000004952 636.15 4191.38 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
41. RPS21 ENSGALG00000005338 632.40 4166.67 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
42. PPIA ENSGALG00000028600 615.57 4055.78 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
43. MT-ND3 MT-ND3 608.08 4006.43
44. RPLP2 ENSGALG00000034811 589.37 3883.16 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
45. RPL23A ENSGALG00000003966 585.63 3858.52 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
46. RPL12 ENSGALG00000008806 581.89 3833.88 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
47. RPS15A ENSGALG00000006771 580.02 3821.55 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
48. RPL15 ENSGALG00000011290 572.53 3772.21 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
49. RPL18A 566.92 3735.24 ribosomal protein L18a
50. RPL23 ENSGALG00000001634 565.05 3722.92 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
51. RPS27A ENSGALG00000036790 565.05 3722.92 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
52. NME2 ENSGALG00000002932 559.43 3685.89 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
53. ENSGALG00000002696 ENSGALG00000002696 555.69 3661.25
54. RPL6 ENSGALG00000004818 553.82 3648.93 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
55. RPL5 ENSGALG00000005922 542.60 3575.01 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
56. RPL38 ENSGALG00000001465 536.98 3537.98 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
57. MT-ND5 MT-ND5 535.11 3525.66
58. EEF1D 531.37 3501.02 eukaryotic translation elongation factor 1 delta, transcript variant X13
59. RPS16 ENSGALG00000026490 529.50 3488.70 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
60. RPL29 ENSGALG00000026978 518.27 3414.71 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
61. RPS20 ENSGALG00000014432 512.66 3377.74 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
62. ENSGALG00000028992 ENSGALG00000028992 492.08 3242.15
63. RPL35 ENSGALG00000035677 480.85 3168.16 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
64. RPL14 ENSGALG00000043379 467.75 3081.85 ribosomal protein L14
65. RPS13 ENSGALG00000006096 452.79 2983.28 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
66. RPL7 ENSGALG00000035252 449.04 2958.57 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
67. RPL24 ENSGALG00000015339 441.56 2909.29 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
68. RPS17 ENSGALG00000002157 430.33 2835.30 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
69. RPS7 ENSGALG00000016392 417.24 2749.05 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
70. RPS25 ENSGALG00000007699 407.88 2687.38 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
71. TMSB4X ENSGALG00000026383 407.88 2687.38 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
72. RPL37 ENSGALG00000014833 406.01 2675.06 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. RPS3 ENSGALG00000017330 400.40 2638.10 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
74. RPL3 ENSGALG00000012172 387.30 2551.79 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
75. SNRPD1 ENSGALG00000041334 387.30 2551.79 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
76. RPL10A ENSGALG00000002644 385.43 2539.47 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. TCEB3 ENSGALG00000034625 376.07 2477.80 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
78. MT-ND4 MT-ND4 366.72 2416.19
79. RPL36 ENSGALG00000000474 366.72 2416.19 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
80. STMN1 ENSGALG00000001475 366.72 2416.19 stathmin 1 [Source:NCBI gene;Acc:396057]
81. UBB ENSGALG00000004509 361.11 2379.23 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
82. ENO1 ENSGALG00000002377 348.01 2292.92 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
83. MT-ND6 MT-ND6 346.14 2280.60
84. ANP32B ENSGALG00000037483 340.53 2243.64 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
85. MT-ND1 MT-ND1 340.53 2243.64
86. HSPA8 ENSGALG00000006512 316.20 2083.33 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
87. EEF2 ENSGALG00000033884 304.98 2009.41 eukaryotic translation elongation factor 2 [Source:NCBI gene;Acc:396325]
88. EEF1B2 ENSGALG00000008590 299.36 1972.38 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
89. FTH FTH 299.36 1972.38
90. TPT1 ENSGALG00000028872 297.49 1960.06 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
91. NUCKS1 ENSGALG00000000708 291.88 1923.10 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
92. RPL31 ENSGALG00000016775 286.27 1886.14 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
93. GPX1 ENSGALG00000028204 276.91 1824.47 glutathione peroxidase 1 [Source:NCBI gene;Acc:100857115]
94. HBZ ENSGALG00000023740 269.43 1775.18 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
95. RPL22 ENSGALG00000000719 269.43 1775.18 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
96. CRHOA CRHOA 265.68 1750.48
97. RPS24 ENSGALG00000004871 265.68 1750.48 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
98. CHCHD2 ENSGALG00000002495 260.07 1713.51 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:NCBI gene;Acc:417544]
99. ATP5G3 258.20 1701.19 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
100. SLC25A6_1 ENSGALG00000016691 256.33 1688.87 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA