Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s17.

Sample reads: 151,995. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3683.10 24232.22
2. EEF1A EEF1A 1824.08 12001.17
3. RPLP1 ENSGALG00000030878 1785.09 11744.64 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
4. RPS23 ENSGALG00000015617 1532.38 10081.99 ribosomal protein S23
5. MT-ATP6 MT-ATP6 1426.19 9383.33
6. RPLP0 ENSGALG00000023294 1229.94 8092.15 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
7. RPS10 ENSGALG00000002813 1178.86 7756.07 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 1142.57 7517.31 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. RPS8 ENSGALG00000010124 1036.38 6818.66 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
10. GAPDH ENSGALG00000014442 1028.31 6765.56 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. RPS3A ENSGALG00000010077 1009.49 6641.74 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
12. RPS6 ENSGALG00000015082 994.71 6544.50 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
13. RPL27A ENSGALG00000005948 936.91 6164.21 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
14. gga-mir-3527 gga-mir-3527 879.10 5783.86
15. RPS12 ENSGALG00000013990 877.76 5775.05 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
16. RPS15 ENSGALG00000015195 877.76 5775.05 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
17. MT-CO1 MT-CO1 872.38 5739.65
18. RPL8 ENSGALG00000016232 871.04 5730.83 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. ENSGALG00000018384 ENSGALG00000018384 868.35 5713.14
20. RPL26 RPL26 864.32 5686.62
21. RPL32 ENSGALG00000027142 860.29 5660.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
22. RPSA 854.91 5624.71 ribosomal protein SA
23. RPL27 ENSGALG00000002837 842.81 5545.10 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
24. RPL19 ENSGALG00000001658 817.27 5377.07 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
25. RPS2 ENSGALG00000005490 787.70 5182.52 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
26. RPS29 ENSGALG00000012229 780.98 5138.30 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
27. RPL4 ENSGALG00000007711 766.19 5040.99 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
28. RPL12 ENSGALG00000008806 764.85 5032.18 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
29. RPL7A ENSGALG00000003197 762.16 5014.48 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
30. ENSGALG00000018386 ENSGALG00000018386 755.44 4970.27
31. RPS4 RPS4 751.41 4943.75
32. RPS28 ENSGALG00000024398 747.37 4917.17 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
33. RPL23A ENSGALG00000003966 705.70 4643.01 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
34. MT-CYB MT-CYB 704.36 4634.20
35. RPL13 ENSGALG00000006179 697.64 4589.98 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
36. RPS14 ENSGALG00000004588 692.26 4554.59 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
37. gga-mir-3533 ENSGALG00000027736 669.41 4404.25 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
38. RPL29 ENSGALG00000026978 657.31 4324.64 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
39. RPL21 ENSGALG00000027035 655.97 4315.82 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
40. ENSGALG00000002696 ENSGALG00000002696 654.62 4306.94
41. RPL6 ENSGALG00000004818 638.49 4200.82 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
42. RPS15A ENSGALG00000006771 623.71 4103.58 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
43. RPS21 ENSGALG00000005338 623.71 4103.58 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
44. TMSB4X ENSGALG00000026383 619.67 4077.00 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
45. RPL36AL ENSGALG00000004952 602.20 3962.06 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
46. RPL18A 600.86 3953.24 ribosomal protein L18a
47. MT-ND3 MT-ND3 588.76 3873.63
48. RPS11 ENSGALG00000017299 588.76 3873.63 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
49. RPS27A ENSGALG00000036790 565.91 3723.29 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
50. RPL5 ENSGALG00000005922 564.56 3714.41 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
51. PPIA ENSGALG00000028600 555.15 3652.50 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
52. RPL35 ENSGALG00000035677 547.09 3599.47 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
53. RPS16 ENSGALG00000026490 530.96 3493.35 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
54. NME2 ENSGALG00000002932 520.20 3422.55 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
55. RPLP2 ENSGALG00000034811 508.11 3343.01 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
56. MT-ND5 MT-ND5 506.76 3334.13
57. ENSGALG00000028992 ENSGALG00000028992 504.07 3316.43
58. RPL24 ENSGALG00000015339 490.63 3228.00 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
59. RPS13 ENSGALG00000006096 487.94 3210.30 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
60. RPL23 ENSGALG00000001634 483.91 3183.79 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
61. RPL7 ENSGALG00000035252 481.22 3166.09 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
62. RPL15 ENSGALG00000011290 479.88 3157.27 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
63. RPS7 ENSGALG00000016392 479.88 3157.27 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
64. RPL14 ENSGALG00000043379 477.19 3139.58 ribosomal protein L14
65. RPL38 ENSGALG00000001465 477.19 3139.58 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
66. MDK ENSGALG00000008367 463.75 3051.15 midkine [Source:NCBI gene;Acc:423196]
67. GNB2L1 ENSGALG00000000122 448.96 2953.84 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
68. RPS20 ENSGALG00000014432 447.62 2945.03 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
69. RPS25 ENSGALG00000007699 446.27 2936.14 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
70. MT-ND4 MT-ND4 423.42 2785.81
71. TCEB3 ENSGALG00000034625 412.67 2715.08 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
72. RPL36 ENSGALG00000000474 385.78 2538.16 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
73. MT-ND1 MT-ND1 377.72 2485.13
74. EEF1D 376.38 2476.32 eukaryotic translation elongation factor 1 delta, transcript variant X13
75. RPS17 ENSGALG00000002157 373.69 2458.62 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
76. ENO1 ENSGALG00000002377 372.34 2449.74 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
77. RPS3 ENSGALG00000017330 369.65 2432.04 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
78. UBB ENSGALG00000004509 366.97 2414.41 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
79. SNRPD1 ENSGALG00000041334 354.87 2334.80 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
80. RPL10A ENSGALG00000002644 344.11 2264.00 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
81. RPL3 ENSGALG00000012172 322.61 2122.55 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
82. FTH FTH 319.92 2104.85
83. RPL31 ENSGALG00000016775 319.92 2104.85 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
84. TXN ENSGALG00000015704 313.20 2060.64 thioredoxin [Source:NCBI gene;Acc:396437]
85. ANP32B ENSGALG00000037483 310.51 2042.94 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
86. RPL37 ENSGALG00000014833 299.76 1972.21 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
87. CRHOA CRHOA 298.41 1963.33
88. ATP5G3 297.07 1954.51 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
89. STMN1 ENSGALG00000001475 284.97 1874.90 stathmin 1 [Source:NCBI gene;Acc:396057]
90. AKAP12 ENSGALG00000036240 280.94 1848.39 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
91. RAN ENSGALG00000002569 279.59 1839.51 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
92. HBZ ENSGALG00000023740 276.90 1821.81 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
93. HSPA8 ENSGALG00000006512 263.46 1733.38 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
94. SLC25A6_1 ENSGALG00000016691 263.46 1733.38 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
95. MT-ND6 MT-ND6 262.12 1724.57
96. NUCKS1 ENSGALG00000000708 259.43 1706.87 nuclear casein kinase and cyclin dependent kinase substrate 1 [Source:NCBI gene;Acc:404775]
97. RPS24 ENSGALG00000004871 258.09 1698.05 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
98. PRDX1 ENSGALG00000010243 256.74 1689.17 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. DYL1 ENSGALG00000007153 252.71 1662.66 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
100. RPL22 ENSGALG00000000719 250.02 1644.96 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA