Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s12.

Sample reads: 152,152. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3230.99 21236.72
2. EEF1A EEF1A 1620.50 10651.26
3. RPS23 ENSGALG00000015617 1456.25 9571.67 ribosomal protein S23
4. ENSGALG00000018384 ENSGALG00000018384 1412.18 9282.01
5. RPLP1 ENSGALG00000030878 1374.12 9031.85 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
6. RPS10 ENSGALG00000002813 1241.92 8162.92 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPLP0 ENSGALG00000023294 1237.91 8136.56 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
8. RPS12 ENSGALG00000013990 1181.83 7767.96 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
9. GAPDH ENSGALG00000014442 1163.80 7649.45 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. RPL35A ENSGALG00000007611, ENSGALG00000041230 1141.76 7504.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
11. ENSGALG00000018386 ENSGALG00000018386 1061.64 6977.97
12. MT-ATP6 MT-ATP6 1045.62 6872.67
13. RPS3A ENSGALG00000010077 1021.58 6714.66 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
14. RPS8 ENSGALG00000010124 1017.57 6688.31 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
15. RPL27A ENSGALG00000005948 979.51 6438.14 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
16. RPS15 ENSGALG00000015195 977.51 6425.00 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
17. RPS6 ENSGALG00000015082 957.48 6293.35 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
18. RPS29 ENSGALG00000012229 943.46 6201.19 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
19. RPL8 ENSGALG00000016232 913.41 6003.68 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL27 ENSGALG00000002837 903.40 5937.89 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
21. RPSA 871.35 5727.23 ribosomal protein SA
22. RPL26 RPL26 863.33 5674.51
23. RPL19 ENSGALG00000001658 851.32 5595.57 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
24. RPS2 ENSGALG00000005490 821.27 5398.06 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
25. RPL32 ENSGALG00000027142 819.27 5384.92 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
26. RPL4 ENSGALG00000007711 807.25 5305.91 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
27. MT-CO1 MT-CO1 747.15 4910.88
28. gga-mir-3533 ENSGALG00000027736 745.15 4897.74 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
29. PPIA ENSGALG00000028600 743.15 4884.59 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
30. RPL7A ENSGALG00000003197 735.14 4831.94 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
31. TMSB4X ENSGALG00000026383 727.12 4779.23 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
32. RPS28 ENSGALG00000024398 719.11 4726.58 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
33. RPL13 ENSGALG00000006179 707.09 4647.58 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
34. RPS4 RPS4 705.09 4634.43
35. gga-mir-3527 gga-mir-3527 699.08 4594.93
36. RPL23A ENSGALG00000003966 695.07 4568.57 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
37. RPS14 ENSGALG00000004588 645.00 4239.47 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
38. RPL36AL ENSGALG00000004952 638.99 4199.97 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
39. RPS27A ENSGALG00000036790 636.98 4186.76 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
40. RPS21 ENSGALG00000005338 620.96 4081.46 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
41. RPS16 ENSGALG00000026490 604.93 3976.10 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
42. MT-CYB MT-CYB 602.93 3962.95
43. RPL5 ENSGALG00000005922 582.90 3831.30 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
44. RPL24 ENSGALG00000015339 576.89 3791.80 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
45. RPS15A ENSGALG00000006771 572.89 3765.50 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
46. ENSGALG00000002696 ENSGALG00000002696 570.88 3752.29
47. RPS11 ENSGALG00000017299 568.88 3739.15 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
48. RPL21 ENSGALG00000027035 562.87 3699.64 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
49. RPL29 ENSGALG00000026978 562.87 3699.64 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
50. UBB ENSGALG00000004509 558.86 3673.29 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
51. RPL12 ENSGALG00000008806 550.85 3620.64 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
52. RPL18A 538.83 3541.63 ribosomal protein L18a
53. RPL23 ENSGALG00000001634 536.83 3528.49 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
54. RPL7 ENSGALG00000035252 516.80 3396.83 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
55. RPL35 ENSGALG00000035677 514.80 3383.69 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
56. RPL6 ENSGALG00000004818 512.79 3370.48 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
57. MT-ND3 MT-ND3 504.78 3317.83
58. RPLP2 ENSGALG00000034811 504.78 3317.83 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
59. RPS7 ENSGALG00000016392 502.78 3304.68 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
60. RPL15 ENSGALG00000011290 486.75 3199.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
61. RPS20 ENSGALG00000014432 486.75 3199.32 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
62. RPS25 ENSGALG00000007699 486.75 3199.32 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
63. RPS17 ENSGALG00000002157 484.75 3186.18 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
64. STMN1 ENSGALG00000001475 484.75 3186.18 stathmin 1 [Source:NCBI gene;Acc:396057]
65. NME2 ENSGALG00000002932 482.75 3173.03 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
66. RPL38 ENSGALG00000001465 480.74 3159.82 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
67. ENSGALG00000028992 ENSGALG00000028992 474.73 3120.32
68. RPL14 ENSGALG00000043379 448.69 2949.16 ribosomal protein L14
69. RPL36 ENSGALG00000000474 438.68 2883.37 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. RPS13 ENSGALG00000006096 436.67 2870.15 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
71. HBZ ENSGALG00000023740 432.67 2843.86 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
72. RPL10A ENSGALG00000002644 426.66 2804.36 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
73. TCEB3 ENSGALG00000034625 418.65 2751.71 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
74. GNB2L1 ENSGALG00000000122 414.64 2725.35 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
75. MT-ND5 MT-ND5 394.61 2593.70
76. RPL3 ENSGALG00000012172 394.61 2593.70 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
77. RPL37 ENSGALG00000014833 394.61 2593.70 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
78. SNRPD1 ENSGALG00000041334 394.61 2593.70 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
79. ENO1 ENSGALG00000002377 384.59 2527.84 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
80. EEF1D 378.59 2488.40 eukaryotic translation elongation factor 1 delta, transcript variant X13
81. RAN ENSGALG00000002569 360.56 2369.90 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
82. FTH FTH 350.54 2304.04
83. AKAP12 ENSGALG00000036240 340.53 2238.24 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
84. RPS3 ENSGALG00000017330 340.53 2238.24 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
85. TXN ENSGALG00000015704 340.53 2238.24 thioredoxin [Source:NCBI gene;Acc:396437]
86. HSPA8 ENSGALG00000006512 332.51 2185.53 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
87. ANP32B ENSGALG00000037483 330.51 2172.38 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
88. ATP5G3 316.49 2080.23 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
89. MT-ND4 MT-ND4 314.49 2067.09
90. MARCKSL1 ENSGALG00000032335 312.48 2053.88 MARCKS like 1 [Source:NCBI gene;Acc:770764]
91. MT-ND1 MT-ND1 312.48 2053.88
92. HBE 302.47 1988.08 hemoglobin subunit epsilon
93. RPL22 ENSGALG00000000719 298.46 1961.72 ribosomal protein L22 [Source:NCBI gene;Acc:373937]
94. DYL1 ENSGALG00000007153 292.45 1922.22 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
95. HBG1 HBG1 290.45 1909.08
96. LDHB ENSGALG00000035836 288.45 1895.93 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
97. MDK ENSGALG00000008367 284.44 1869.57 midkine [Source:NCBI gene;Acc:423196]
98. PRDX1 ENSGALG00000010243 284.44 1869.57 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. SLC25A6_1 ENSGALG00000016691 284.44 1869.57 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
100. RPL31 ENSGALG00000016775 280.43 1843.22 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA