Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E4_anterior_slice_1, section s11.

Sample reads: 152,156. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 3451.16 22682.65
2. RPLP1 ENSGALG00000030878 1532.68 10073.50 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
3. RPLP0 ENSGALG00000023294 1392.16 9149.93 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
4. RPS23 ENSGALG00000015617 1320.59 8679.54 ribosomal protein S23
5. EEF1A EEF1A 1250.76 8220.59
6. RPS10 ENSGALG00000002813 1215.85 7991.14 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
7. RPS12 ENSGALG00000013990 1125.95 7400.28 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
8. RPL35A ENSGALG00000007611, ENSGALG00000041230 1117.22 7342.90 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
9. MT-ATP6 MT-ATP6 1105.00 7262.58
10. RPS8 ENSGALG00000010124 1042.16 6849.57 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
11. RPL27A ENSGALG00000005948 1029.06 6763.47 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
12. GAPDH ENSGALG00000014442 1027.32 6752.03 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
13. RPS29 ENSGALG00000012229 1021.21 6711.87 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
14. ENSGALG00000018384 ENSGALG00000018384 996.77 6551.24
15. RPS3A ENSGALG00000010077 953.13 6264.42 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
16. RPS15 ENSGALG00000015195 941.78 6189.82 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
17. RPL8 ENSGALG00000016232 926.07 6086.57 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
18. ENSGALG00000018386 ENSGALG00000018386 924.32 6075.07
19. gga-mir-3527 gga-mir-3527 917.34 6029.19
20. RPL27 ENSGALG00000002837 897.27 5897.28 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
21. gga-mir-3533 ENSGALG00000027736 890.28 5851.34 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
22. MT-CO1 MT-CO1 878.94 5776.81
23. RPS6 ENSGALG00000015082 875.45 5753.87 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
24. TMSB4X ENSGALG00000026383 851.01 5593.24 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
25. RPL4 ENSGALG00000007711 849.26 5581.74 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
26. RPS4 RPS4 830.93 5461.26
27. RPSA 830.06 5455.55 ribosomal protein SA
28. RPL32 ENSGALG00000027142 828.31 5444.04 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
29. RPS28 ENSGALG00000024398 823.08 5409.67 ribosomal protein S28 [Source:NCBI gene;Acc:768930]
30. RPL19 ENSGALG00000001658 820.46 5392.45 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
31. RPL26 RPL26 792.53 5208.88
32. RPL23A ENSGALG00000003966 791.65 5203.10 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
33. RPL7A ENSGALG00000003197 760.23 4996.59 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
34. RPS14 ENSGALG00000004588 697.39 4583.58 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
35. RPS21 ENSGALG00000005338 691.28 4543.42 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
36. RPL13 ENSGALG00000006179 679.06 4463.10 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
37. RPS2 ENSGALG00000005490 674.70 4434.45 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
38. PPIA ENSGALG00000028600 631.05 4147.56 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
39. RPL29 ENSGALG00000026978 624.94 4107.40 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
40. RPL36AL ENSGALG00000004952 621.45 4084.46 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
41. RPS11 ENSGALG00000017299 620.58 4078.75 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. RPS16 ENSGALG00000026490 607.49 3992.71 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPL18A 596.14 3918.11 ribosomal protein L18a
44. RPLP2 ENSGALG00000034811 592.65 3895.18 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
45. RPS27A ENSGALG00000036790 590.90 3883.67 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
46. ENSGALG00000002696 ENSGALG00000002696 576.94 3791.92
47. MT-CYB MT-CYB 576.94 3791.92
48. RPS15A ENSGALG00000006771 570.83 3751.76 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
49. MT-ND3 MT-ND3 566.46 3723.04
50. RPL21 ENSGALG00000027035 562.97 3700.10 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. STMN1 ENSGALG00000001475 554.25 3642.79 stathmin 1 [Source:NCBI gene;Acc:396057]
52. RPL24 ENSGALG00000015339 546.39 3591.13 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
53. RPL23 ENSGALG00000001634 545.52 3585.42 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
54. RPL12 ENSGALG00000008806 541.15 3556.69 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
55. RPL5 ENSGALG00000005922 533.30 3505.10 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
56. RPS25 ENSGALG00000007699 531.55 3493.60 ribosomal protein S25 [Source:HGNC Symbol;Acc:HGNC:10413]
57. NME2 ENSGALG00000002932 530.68 3487.88 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
58. RPL14 ENSGALG00000043379 523.70 3442.00 ribosomal protein L14
59. RPS7 ENSGALG00000016392 520.20 3419.00 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
60. RPL38 ENSGALG00000001465 516.71 3396.06 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
61. RPL35 ENSGALG00000035677 513.22 3373.12 ribosomal protein L35 [Source:NCBI gene;Acc:374133]
62. UBB ENSGALG00000004509 506.24 3327.25 Gallus gallus ubiquitin B (UBB), mRNA. [Source:RefSeq mRNA;Acc:NM_001353988]
63. RPS20 ENSGALG00000014432 464.34 3051.86 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
64. RPS13 ENSGALG00000006096 460.85 3028.92 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
65. RPL7 ENSGALG00000035252 449.51 2954.39 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
66. ENSGALG00000028992 ENSGALG00000028992 448.63 2948.61
67. RPS17 ENSGALG00000002157 437.29 2874.08 ribosomal protein S17 [Source:NCBI gene;Acc:374053]
68. RPL15 ENSGALG00000011290 436.41 2868.29 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
69. RPL36 ENSGALG00000000474 434.67 2856.86 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
70. ENO1 ENSGALG00000002377 428.56 2816.70 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
71. RPL6 ENSGALG00000004818 423.32 2782.26 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
72. RPL37 ENSGALG00000014833 415.47 2730.67 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
73. MT-ND5 MT-ND5 398.88 2621.63
74. GNB2L1 ENSGALG00000000122 396.26 2604.41 receptor for activated C kinase 1 [Source:NCBI gene;Acc:417044]
75. RAN ENSGALG00000002569 391.90 2575.75 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
76. SNRPD1 ENSGALG00000041334 391.03 2570.03 small nuclear ribonucleoprotein D1 polypeptide [Source:NCBI gene;Acc:776411]
77. RPL10A ENSGALG00000002644 377.06 2478.22 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
78. FTH FTH 373.57 2455.28
79. TCEB3 ENSGALG00000034625 371.82 2443.78 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
80. HBZ ENSGALG00000023740 365.71 2403.62 hemoglobin subunit zeta [Source:NCBI gene;Acc:416650]
81. MT-ND4 MT-ND4 343.02 2254.49
82. RPL31 ENSGALG00000016775 336.04 2208.61 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
83. ATP5G3 330.80 2174.17 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
84. MARCKSL1 ENSGALG00000032335 320.33 2105.36 MARCKS like 1 [Source:NCBI gene;Acc:770764]
85. MT-ND1 MT-ND1 318.58 2093.86
86. RPS3 ENSGALG00000017330 310.73 2042.26 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
87. PRDX1 ENSGALG00000010243 299.38 1967.67 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
88. RPL3 ENSGALG00000012172 299.38 1967.67 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
89. TUBB2B ENSGALG00000012821 299.38 1967.67 tubulin beta 2B class IIb [Source:NCBI gene;Acc:420883]
90. DYL1 ENSGALG00000007153 293.27 1927.51 dynein light chain 1 cytoplasmic [Source:NCBI gene;Acc:427708]
91. HSPA8 ENSGALG00000006512 293.27 1927.51 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
92. EEF1D 292.40 1921.79 eukaryotic translation elongation factor 1 delta, transcript variant X13
93. TXN ENSGALG00000015704 288.91 1898.85 thioredoxin [Source:NCBI gene;Acc:396437]
94. AKAP12 ENSGALG00000036240 280.18 1841.48 A-kinase anchoring protein 12 [Source:HGNC Symbol;Acc:HGNC:370]
95. HBG1 HBG1 273.19 1795.53
96. RPS24 ENSGALG00000004871 267.96 1761.16 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
97. SLC25A6_1 ENSGALG00000016691 267.96 1761.16 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
98. ANP32B ENSGALG00000037483 265.34 1743.94 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
99. HBE 262.72 1726.72 hemoglobin subunit epsilon
100. TPT1 ENSGALG00000028872 259.23 1703.78 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA