Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s58.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5959.90 47970.16
2. MT-ATP6 MT-ATP6 4737.35 38130.07
3. MT-ND4 MT-ND4 3514.81 28290.07
4. MT-ND5 MT-ND5 3056.36 24600.09
5. MT-CO1 MT-CO1 2903.54 23370.07
6. gga-mir-3527 gga-mir-3527 2597.90 20910.03
7. gga-mir-3533 ENSGALG00000027736 2597.90 20910.03 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
8. MT-ND1 MT-ND1 2139.45 17220.05
9. MT-CYB MT-CYB 1986.63 15990.03
10. GAPDH ENSGALG00000014442 1681.00 13530.06 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. EEF1A EEF1A 1528.18 12300.04
12. MT-ND3 MT-ND3 1375.36 11070.02
13. NME2 ENSGALG00000002932 1069.72 8609.98 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. RPS24 ENSGALG00000004871 1069.72 8609.98 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
15. RPL13 ENSGALG00000006179 916.91 7380.04 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
16. EIF4G2 ENSGALG00000005587 764.09 6150.02 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
17. MDK ENSGALG00000008367 764.09 6150.02 midkine [Source:NCBI gene;Acc:423196]
18. MT-ND2 MT-ND2 764.09 6150.02
19. RPL15 ENSGALG00000011290 764.09 6150.02 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
20. SMC4 ENSGALG00000009553 764.09 6150.02 structural maintenance of chromosomes 4 [Source:NCBI gene;Acc:395189]
21. DYNLT1 ENSGALG00000019979 611.27 4920.00 dynein light chain Tctex-type 1 [Source:HGNC Symbol;Acc:HGNC:11697]
22. ENSGALG00000018384 ENSGALG00000018384 611.27 4920.00
23. FKBP4 ENSGALG00000014331 611.27 4920.00 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
24. HMGN2 HMGN2 611.27 4920.00
25. RPS3 ENSGALG00000017330 611.27 4920.00 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
26. FGD5 ENSGALG00000008546 458.45 3689.98 FYVE, RhoGEF and PH domain containing 5 [Source:HGNC Symbol;Acc:HGNC:19117]
27. H3-IX H3-IX 458.45 3689.98
28. HSPA8 ENSGALG00000006512 458.45 3689.98 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
29. KDM5B ENSGALG00000038948 458.45 3689.98 lysine demethylase 5B [Source:NCBI gene;Acc:421168]
30. MEIS2 ENSGALG00000039118 458.45 3689.98 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
31. PAPOLA ENSGALG00000033099 458.45 3689.98 poly(A) polymerase alpha [Source:NCBI gene;Acc:395878]
32. PPIA ENSGALG00000028600 458.45 3689.98 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
33. PPP2CA ENSGALG00000006462 458.45 3689.98 protein phosphatase 2 catalytic subunit alpha [Source:NCBI gene;Acc:416318]
34. PRDX1 ENSGALG00000010243 458.45 3689.98 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
35. RAN ENSGALG00000002569 458.45 3689.98 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
36. RPL24 ENSGALG00000015339 458.45 3689.98 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
37. RPL26 RPL26 458.45 3689.98
38. RPL27A ENSGALG00000005948 458.45 3689.98 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
39. RPL37 ENSGALG00000014833 458.45 3689.98 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
40. RPL7 ENSGALG00000035252 458.45 3689.98 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
41. RPS15A ENSGALG00000006771 458.45 3689.98 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
42. RPS20 ENSGALG00000014432 458.45 3689.98 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
43. SFPQ ENSGALG00000002514 458.45 3689.98 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
44. SKA2 ENSGALG00000005090 458.45 3689.98 spindle and kinetochore associated complex subunit 2 [Source:HGNC Symbol;Acc:HGNC:28006]
45. SLC25A6_1 ENSGALG00000016691 458.45 3689.98 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
46. ALDOC ENSGALG00000026077 305.64 2460.04 aldolase, fructose-bisphosphate C [Source:NCBI gene;Acc:395492]
47. ANP32B ENSGALG00000037483 305.64 2460.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
48. ARL6IP5 ENSGALG00000038904 305.64 2460.04 ADP ribosylation factor like GTPase 6 interacting protein 5 [Source:NCBI gene;Acc:426074]
49. BRIX1 ENSGALG00000003373 305.64 2460.04 BRX1, biogenesis of ribosomes [Source:NCBI gene;Acc:427433]
50. BTF3L4 ENSGALG00000010570 305.64 2460.04 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
51. BUD31 ENSGALG00000004705 305.64 2460.04 BUD31 homolog [Source:HGNC Symbol;Acc:HGNC:29629]
52. C5H14ORF166 C5H14ORF166 305.64 2460.04
53. CIRBP ENSGALG00000030918 305.64 2460.04 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
54. CNN3 ENSGALG00000005597 305.64 2460.04 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
55. COX16 ENSGALG00000020449 305.64 2460.04 cytochrome c oxidase assembly factor COX16 [Source:NCBI gene;Acc:423257]
56. CSK ENSGALG00000031270 305.64 2460.04 C-terminal Src kinase [Source:NCBI gene;Acc:396396]
57. CWC15 ENSGALG00000017207 305.64 2460.04 CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
58. DDX5 ENSGALG00000003532 305.64 2460.04 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
59. DSTN ENSGALG00000008667 305.64 2460.04 destrin, actin depolymerizing factor [Source:NCBI gene;Acc:396539]
60. EIF4A3 ENSGALG00000008530 305.64 2460.04 eukaryotic translation initiation factor 4A3 [Source:NCBI gene;Acc:416704]
61. ENO1 ENSGALG00000002377 305.64 2460.04 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
62. ENSGALG00000009044 ENSGALG00000009044 305.64 2460.04
63. ENSGALG00000028649 ENSGALG00000028649 305.64 2460.04
64. ENSGALG00000028992 ENSGALG00000028992 305.64 2460.04
65. FBN3 ENSGALG00000037625 305.64 2460.04 fibrillin 3 [Source:HGNC Symbol;Acc:HGNC:18794]
66. FTSJ2 FTSJ2 305.64 2460.04
67. HDLBP ENSGALG00000005823 305.64 2460.04 high density lipoprotein binding protein [Source:NCBI gene;Acc:395984]
68. HSP90AA1 ENSGALG00000033212 305.64 2460.04 heat shock protein 90 alpha family class A member 1 [Source:NCBI gene;Acc:423463]
69. HSP90AB1 ENSGALG00000010175 305.64 2460.04 heat shock protein 90 alpha family class B member 1 [Source:NCBI gene;Acc:396188]
70. HSPA5 ENSGALG00000001000 305.64 2460.04 heat shock 70kDa protein 5 (glucose-regulated protein, 78kDa) [Source:NCBI gene;Acc:396487]
71. KPNA2 ENSGALG00000003584 305.64 2460.04 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
72. KPNA4 ENSGALG00000009549 305.64 2460.04 karyopherin subunit alpha 4 [Source:NCBI gene;Acc:425012]
73. LIPA ENSGALG00000006378 305.64 2460.04 lipase A, lysosomal acid type [Source:HGNC Symbol;Acc:HGNC:6617]
74. MRPL19 ENSGALG00000016731 305.64 2460.04 mitochondrial ribosomal protein L19, transcript variant X1
75. MRPL28 ENSGALG00000007473 305.64 2460.04 mitochondrial ribosomal protein L28 [Source:NCBI gene;Acc:426121]
76. PARP1 ENSGALG00000009228 305.64 2460.04 poly (ADP-ribose) polymerase 1 [Source:NCBI gene;Acc:396199]
77. PNRC1 ENSGALG00000015780 305.64 2460.04 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
78. PPFIBP1 ENSGALG00000014106 305.64 2460.04 PPFIA binding protein 1 [Source:NCBI gene;Acc:418219]
79. PSMD12 ENSGALG00000026225 305.64 2460.04 proteasome 26S subunit, non-ATPase 12 [Source:NCBI gene;Acc:417425]
80. PTPN12 305.64 2460.04 protein tyrosine phosphatase, non-receptor type 12
81. RABL5 RABL5 305.64 2460.04
82. RASGEF1B 305.64 2460.04 RasGEF domain family member 1B, transcript variant X8
83. RPL19 ENSGALG00000001658 305.64 2460.04 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
84. RPL21 ENSGALG00000027035 305.64 2460.04 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
85. RPL23 ENSGALG00000001634 305.64 2460.04 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
86. RPL27 ENSGALG00000002837 305.64 2460.04 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
87. RPL29 ENSGALG00000026978 305.64 2460.04 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
88. RPL3 ENSGALG00000012172 305.64 2460.04 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
89. RPL38 ENSGALG00000001465 305.64 2460.04 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
90. RPL39 ENSGALG00000008620 305.64 2460.04 ribosomal protein L39 [Source:NCBI gene;Acc:374132]
91. RPL5 ENSGALG00000005922 305.64 2460.04 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
92. RPL7A ENSGALG00000003197 305.64 2460.04 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
93. RPS10 ENSGALG00000002813 305.64 2460.04 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
94. RPS12 ENSGALG00000013990 305.64 2460.04 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
95. RPS13 ENSGALG00000006096 305.64 2460.04 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
96. RPS14 ENSGALG00000004588 305.64 2460.04 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
97. RPS15 ENSGALG00000015195 305.64 2460.04 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
98. RPS16 ENSGALG00000026490 305.64 2460.04 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
99. RPS3A ENSGALG00000010077 305.64 2460.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
100. RPS6 ENSGALG00000015082 305.64 2460.04 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA