Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s53.

Sample reads: 124,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5394.45 43418.98
2. MT-ATP6 MT-ATP6 4382.99 35277.92
3. MT-ND5 MT-ND5 3540.11 28493.72
4. EEF1A EEF1A 2865.80 23066.32
5. MT-ND3 MT-ND3 2865.80 23066.32
6. MT-ND4 MT-ND4 2697.22 21709.45
7. MT-CYB MT-CYB 2191.50 17639.00
8. gga-mir-3527 gga-mir-3527 2191.50 17639.00
9. GAPDH ENSGALG00000014442 2022.92 16282.13 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
10. MT-CO1 MT-CO1 1685.77 13568.47
11. gga-mir-3533 ENSGALG00000027736 1517.19 12211.60 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. FKBP4 ENSGALG00000014331 1348.61 10854.72 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
13. RPL7 ENSGALG00000035252 1348.61 10854.72 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
14. MT-ND1 MT-ND1 1180.04 9497.93
15. HMGN5 ENSGALG00000007131 1011.46 8141.06 high mobility group nucleosome binding domain 5, transcript variant X1
16. PPIA ENSGALG00000028600 1011.46 8141.06 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
17. RPLP2 ENSGALG00000034811 1011.46 8141.06 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
18. RPS24 ENSGALG00000004871 1011.46 8141.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
19. DENR ENSGALG00000003795 674.31 5427.40 density regulated re-initiation and release factor [Source:NCBI gene;Acc:771794]
20. RPL23 ENSGALG00000001634 674.31 5427.40 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
21. RPL5 ENSGALG00000005922 674.31 5427.40 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. RPS15A ENSGALG00000006771 674.31 5427.40 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
23. RPS16 ENSGALG00000026490 674.31 5427.40 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
24. RPS6 ENSGALG00000015082 674.31 5427.40 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
25. ENO1 ENSGALG00000002377 505.73 4070.53 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
26. ENSGALG00000016007 ENSGALG00000016007 505.73 4070.53
27. HSPA8 ENSGALG00000006512 505.73 4070.53 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
28. NME2 ENSGALG00000002932 505.73 4070.53 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
29. NUTF2 ENSGALG00000001602 505.73 4070.53 nuclear transport factor 2 [Source:NCBI gene;Acc:415655]
30. RPL15 ENSGALG00000011290 505.73 4070.53 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
31. RPL26 RPL26 505.73 4070.53
32. RPL27A ENSGALG00000005948 505.73 4070.53 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
33. RPL37 ENSGALG00000014833 505.73 4070.53 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
34. RPLP0 ENSGALG00000023294 505.73 4070.53 ribosomal protein lateral stalk subunit P0 [Source:NCBI gene;Acc:395835]
35. RPS23 ENSGALG00000015617 505.73 4070.53 ribosomal protein S23
36. RPS27A ENSGALG00000036790 505.73 4070.53 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. SEC61G ENSGALG00000037863 505.73 4070.53 Sec61 translocon gamma subunit [Source:NCBI gene;Acc:776639]
38. SHFM1 SHFM1 505.73 4070.53
39. UBE2D3 ENSGALG00000012311 505.73 4070.53 ubiquitin conjugating enzyme E2 D3 [Source:NCBI gene;Acc:422713]
40. ABRACL ENSGALG00000013826 337.15 2713.66 ABRA C-terminal like [Source:NCBI gene;Acc:770205]
41. ADARB1 ENSGALG00000007527 337.15 2713.66 adenosine deaminase, RNA specific B1 [Source:NCBI gene;Acc:374087]
42. ANP32B ENSGALG00000037483 337.15 2713.66 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
43. ANP32E ENSGALG00000039891 337.15 2713.66 acidic nuclear phosphoprotein 32 family member E [Source:NCBI gene;Acc:426109]
44. ATP6V0C ENSGALG00000009229 337.15 2713.66 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
45. ATRX ENSGALG00000007843 337.15 2713.66 ATRX, chromatin remodeler [Source:HGNC Symbol;Acc:HGNC:886]
46. BCAS2 ENSGALG00000002002 337.15 2713.66 breast carcinoma amplified sequence 2 [Source:NCBI gene;Acc:419884]
47. BCKDHB ENSGALG00000040702 337.15 2713.66 branched chain keto acid dehydrogenase E1, beta polypeptide [Source:NCBI gene;Acc:395375]
48. BUD31 ENSGALG00000004705 337.15 2713.66 BUD31 homolog [Source:HGNC Symbol;Acc:HGNC:29629]
49. CBX3 ENSGALG00000011038 337.15 2713.66 chromobox 3 [Source:NCBI gene;Acc:395355]
50. COX6A1 ENSGALG00000007205 337.15 2713.66 cytochrome c oxidase subunit 6A1 [Source:NCBI gene;Acc:416978]
51. CWC15 ENSGALG00000017207 337.15 2713.66 CWC15 spliceosome associated protein homolog [Source:NCBI gene;Acc:418996]
52. DDX5 ENSGALG00000003532 337.15 2713.66 DEAD-box helicase 5 [Source:NCBI gene;Acc:395629]
53. DNAJC2 ENSGALG00000008249 337.15 2713.66 DnaJ heat shock protein family (Hsp40) member C2 [Source:NCBI gene;Acc:417717]
54. EEF1D 337.15 2713.66 eukaryotic translation elongation factor 1 delta, transcript variant X13
55. EIF1 ENSGALG00000028517 337.15 2713.66 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
56. EIF2S1 ENSGALG00000009565 337.15 2713.66 eukaryotic translation initiation factor 2 subunit alpha [Source:NCBI gene;Acc:423279]
57. EIF3F ENSGALG00000005326 337.15 2713.66 eukaryotic translation initiation factor 3 subunit F
58. EIF4A2 ENSGALG00000008684 337.15 2713.66 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
59. ENSGALG00000002696 ENSGALG00000002696 337.15 2713.66
60. ERH ENSGALG00000017384 337.15 2713.66 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
61. FGFRL1 ENSGALG00000037525 337.15 2713.66 fibroblast growth factor receptor like 1 [Source:NCBI gene;Acc:395107]
62. GATD3A ENSGALG00000016918 337.15 2713.66 glutamine amidotransferase like class 1 domain containing 3A [Source:NCBI gene;Acc:418811]
63. H2AFY_1 ENSGALG00000040141 337.15 2713.66 H2A histone family, member Y [Source:NCBI gene;Acc:395858]
64. HMGN2 HMGN2 337.15 2713.66
65. HNRNPA0 ENSGALG00000006160 337.15 2713.66 heterogeneous nuclear ribonucleoprotein A0 [Source:HGNC Symbol;Acc:HGNC:5030]
66. HSPE1 ENSGALG00000009070 337.15 2713.66 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
67. ID2 ENSGALG00000035016 337.15 2713.66 inhibitor of DNA binding 2, HLH protein [Source:NCBI gene;Acc:395852]
68. IGF2BP2 ENSGALG00000033195 337.15 2713.66 insulin like growth factor 2 mRNA binding protein 2 [Source:HGNC Symbol;Acc:HGNC:28867]
69. KDM5B ENSGALG00000038948 337.15 2713.66 lysine demethylase 5B [Source:NCBI gene;Acc:421168]
70. KPNA2 ENSGALG00000003584 337.15 2713.66 karyopherin subunit alpha 2 [Source:NCBI gene;Acc:417420]
71. LGALS1 ENSGALG00000012420 337.15 2713.66 galectin 1 [Source:NCBI gene;Acc:396491]
72. MDK ENSGALG00000008367 337.15 2713.66 midkine [Source:NCBI gene;Acc:423196]
73. MGST3 ENSGALG00000003445 337.15 2713.66 microsomal glutathione S-transferase 3 [Source:NCBI gene;Acc:424404]
74. MLF2 ENSGALG00000014468 337.15 2713.66 myeloid leukemia factor 2 [Source:NCBI gene;Acc:418284]
75. MT-ND6 MT-ND6 337.15 2713.66
76. NDUFV2 ENSGALG00000036625 337.15 2713.66 NADH:ubiquinone oxidoreductase core subunit V2 [Source:HGNC Symbol;Acc:HGNC:7717]
77. PAFAH1B1 ENSGALG00000005834 337.15 2713.66 platelet activating factor acetylhydrolase 1b regulatory subunit 1 [Source:NCBI gene;Acc:374224]
78. PARVB ENSGALG00000014201 337.15 2713.66 parvin beta [Source:HGNC Symbol;Acc:HGNC:14653]
79. PFDN4 ENSGALG00000007792 337.15 2713.66 prefoldin subunit 4 [Source:NCBI gene;Acc:419337]
80. PNRC2 ENSGALG00000004122 337.15 2713.66 proline rich nuclear receptor coactivator 2 [Source:NCBI gene;Acc:419688]
81. PRDX1 ENSGALG00000010243 337.15 2713.66 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
82. PSMB7 ENSGALG00000001103 337.15 2713.66 proteasome subunit beta 7 [Source:NCBI gene;Acc:378915]
83. RBBP6 ENSGALG00000006043 337.15 2713.66 RB binding protein 6, ubiquitin ligase [Source:HGNC Symbol;Acc:HGNC:9889]
84. RPL10A ENSGALG00000002644 337.15 2713.66 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
85. RPL13 ENSGALG00000006179 337.15 2713.66 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
86. RPL14 ENSGALG00000043379 337.15 2713.66 ribosomal protein L14
87. RPL19 ENSGALG00000001658 337.15 2713.66 ribosomal protein L19 [Source:NCBI gene;Acc:420003]
88. RPL32 ENSGALG00000027142 337.15 2713.66 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
89. RPL36AL ENSGALG00000004952 337.15 2713.66 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
90. RPL7A ENSGALG00000003197 337.15 2713.66 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
91. RPLP1 ENSGALG00000030878 337.15 2713.66 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
92. RPS13 ENSGALG00000006096 337.15 2713.66 ribosomal protein S13 [Source:NCBI gene;Acc:414782]
93. RPS21 ENSGALG00000005338 337.15 2713.66 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
94. RPS8 ENSGALG00000010124 337.15 2713.66 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
95. RPSA 337.15 2713.66 ribosomal protein SA
96. RRM1 ENSGALG00000017350 337.15 2713.66 ribonucleotide reductase catalytic subunit M1 [Source:NCBI gene;Acc:419081]
97. SFPQ ENSGALG00000002514 337.15 2713.66 splicing factor proline and glutamine rich [Source:HGNC Symbol;Acc:HGNC:10774]
98. SLC25A6_1 ENSGALG00000016691 337.15 2713.66 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
99. STMN1 ENSGALG00000001475 337.15 2713.66 stathmin 1 [Source:NCBI gene;Acc:396057]
100. TCEB3 ENSGALG00000034625 337.15 2713.66 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA