Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s35.

Sample reads: 124,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4425.42 35625.64
2. MT-ND5 MT-ND5 4051.15 32612.68
3. MT-ATP6 MT-ATP6 3732.32 30046.03
4. gga-mir-3533 ENSGALG00000027736 2893.68 23294.78 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
5. MT-CYB MT-CYB 2401.58 19333.27
6. MT-ND4 MT-ND4 1989.19 16013.43
7. gga-mir-3527 gga-mir-3527 1857.50 14953.30
8. EEF1A EEF1A 1739.67 14004.74
9. MT-CO1 MT-CO1 1583.72 12749.31
10. GAPDH ENSGALG00000014442 1289.16 10378.03 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
11. MT-ND1 MT-ND1 1147.07 9234.17
12. MT-ND3 MT-ND3 1053.51 8481.00
13. PPIA ENSGALG00000028600 907.96 7309.28 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. NME2 ENSGALG00000002932 831.72 6695.54 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. KRT19 ENSGALG00000019719 717.35 5774.83 keratin 19 [Source:NCBI gene;Acc:395861]
16. RPL8 ENSGALG00000016232 654.98 5272.74 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL15 ENSGALG00000011290 551.01 4435.76 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
18. RPL7A ENSGALG00000003197 530.22 4268.39 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
19. ENSGALG00000018384 ENSGALG00000018384 512.89 4128.88
20. MDK ENSGALG00000008367 505.96 4073.09 midkine [Source:NCBI gene;Acc:423196]
21. RPL5 ENSGALG00000005922 488.63 3933.58 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
22. TMSB4X ENSGALG00000026383 488.63 3933.58 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
23. EIF4G2 ENSGALG00000005587 471.31 3794.15 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
24. RPL26 RPL26 450.51 3626.71
25. RPL31 ENSGALG00000016775 422.79 3403.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
26. ENO1 ENSGALG00000002377 412.39 3319.83 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
27. RPS20 ENSGALG00000014432 412.39 3319.83 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
28. RPL7 ENSGALG00000035252 408.93 3291.98 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
29. LUM ENSGALG00000011271 402.00 3236.19 lumican [Source:NCBI gene;Acc:417891]
30. RPS23 ENSGALG00000015617 395.06 3180.32 ribosomal protein S23
31. STMN1 ENSGALG00000001475 395.06 3180.32 stathmin 1 [Source:NCBI gene;Acc:396057]
32. CNN3 ENSGALG00000005597 388.13 3124.53 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
33. RPL27A ENSGALG00000005948 381.20 3068.75 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
34. RPS7 ENSGALG00000016392 374.27 3012.96 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
35. RPL18A 367.34 2957.17 ribosomal protein L18a
36. RPS4 RPS4 367.34 2957.17
37. EEF1B2 ENSGALG00000008590 356.94 2873.45 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
38. RPS6 ENSGALG00000015082 356.94 2873.45 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. RPS10 ENSGALG00000002813 353.48 2845.59 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
40. RPS27A ENSGALG00000036790 353.48 2845.59 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
41. TTR ENSGALG00000015143 353.48 2845.59 transthyretin [Source:NCBI gene;Acc:396277]
42. RPS11 ENSGALG00000017299 339.62 2734.02 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
43. RPS3 ENSGALG00000017330 339.62 2734.02 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
44. CIRBP ENSGALG00000030918 332.69 2678.23 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
45. RPS12 ENSGALG00000013990 332.69 2678.23 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL21 ENSGALG00000027035 325.76 2622.44 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. RPL23 ENSGALG00000001634 318.82 2566.57 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
48. RPL27 ENSGALG00000002837 315.36 2538.72 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
49. RPS15 ENSGALG00000015195 315.36 2538.72 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
50. SLC25A6_1 ENSGALG00000016691 308.43 2482.93 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
51. CRHOA CRHOA 304.96 2455.00
52. EIF4EBP1 ENSGALG00000003205 301.50 2427.14 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
53. S100A11 ENSGALG00000036711 284.17 2287.63 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
54. DSP ENSGALG00000012790 270.31 2176.06 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
55. ENSGALG00000018386 ENSGALG00000018386 266.84 2148.12
56. EIF1 ENSGALG00000028517 263.38 2120.27 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
57. MT-ND2 MT-ND2 259.91 2092.33
58. ATP5G3 256.45 2064.48 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
59. ENSGALG00000028992 ENSGALG00000028992 256.45 2064.48
60. RPL4 ENSGALG00000007711 256.45 2064.48 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
61. RPS15A ENSGALG00000006771 252.98 2036.55 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
62. RPL6 ENSGALG00000004818 246.05 1980.76 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPS24 ENSGALG00000004871 246.05 1980.76 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
64. TPT1 ENSGALG00000028872 246.05 1980.76 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
65. ATP6V0C ENSGALG00000009229 242.58 1952.82 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
66. RPS3A ENSGALG00000010077 242.58 1952.82 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
67. ANP32B ENSGALG00000037483 239.12 1924.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
68. RPL13 ENSGALG00000006179 239.12 1924.97 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
69. RPL32 ENSGALG00000027142 239.12 1924.97 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
70. RPL14 ENSGALG00000043379 235.65 1897.04 ribosomal protein L14
71. RPL35A ENSGALG00000007611, ENSGALG00000041230 235.65 1897.04 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
72. RPLP1 ENSGALG00000030878 235.65 1897.04 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
73. PNRC1 ENSGALG00000015780 228.72 1841.25 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
74. RPSA 228.72 1841.25 ribosomal protein SA
75. TXN ENSGALG00000015704 228.72 1841.25 thioredoxin [Source:NCBI gene;Acc:396437]
76. H3-IX H3-IX 225.26 1813.39
77. RPS16 ENSGALG00000026490 225.26 1813.39 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
78. RPL10A ENSGALG00000002644 214.86 1729.67 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
79. RPL36 ENSGALG00000000474 207.93 1673.88 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
80. CDC42 ENSGALG00000004796 201.00 1618.10 cell division cycle 42 [Source:NCBI gene;Acc:395917]
81. RPL38 ENSGALG00000001465 201.00 1618.10 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
82. SNRPG ENSGALG00000028409 197.53 1590.16 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
83. EIF3F ENSGALG00000005326 194.07 1562.31 eukaryotic translation initiation factor 3 subunit F
84. RPL3 ENSGALG00000012172 194.07 1562.31 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
85. RPL9 ENSGALG00000000150 194.07 1562.31 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
86. ANXA2 ENSGALG00000003770 190.60 1534.37 annexin A2 [Source:NCBI gene;Acc:396297]
87. NONO ENSGALG00000005507 183.67 1478.59 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
88. ENSGALG00000002696 ENSGALG00000002696 180.20 1450.65
89. RAN ENSGALG00000002569 180.20 1450.65 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
90. RPL12 ENSGALG00000008806 180.20 1450.65 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
91. RPL23A ENSGALG00000003966 180.20 1450.65 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
92. CALM CALM 176.74 1422.80
93. RPL29 ENSGALG00000026978 176.74 1422.80 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
94. RPS29 ENSGALG00000012229 176.74 1422.80 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
95. EIF4A2 ENSGALG00000008684 173.27 1394.86 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
96. GNB1 ENSGALG00000001334 173.27 1394.86 G protein subunit beta 1 [Source:NCBI gene;Acc:419402]
97. NDUFB9 ENSGALG00000042242 173.27 1394.86 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
98. LDB2 ENSGALG00000014485 169.81 1367.01 LIM domain binding 2 [Source:NCBI gene;Acc:395631]
99. LDHB ENSGALG00000035836 169.81 1367.01 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
100. SNRPE ENSGALG00000000137 169.81 1367.01 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA