Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s34.

Sample reads: 124,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4867.20 39180.69
2. MT-ND5 MT-ND5 4320.59 34780.51
3. MT-ATP6 MT-ATP6 3460.05 27853.21
4. MT-CYB MT-CYB 2139.64 17223.98
5. gga-mir-3533 ENSGALG00000027736 2135.51 17190.74 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
6. EEF1A EEF1A 1981.30 15949.35
7. MT-ND4 MT-ND4 1940.00 15616.89
8. gga-mir-3527 gga-mir-3527 1851.88 14907.53
9. MT-CO1 MT-CO1 1785.79 14375.51
10. MT-ND1 MT-ND1 1442.95 11615.67
11. MT-ND3 MT-ND3 1269.46 10219.08
12. PPIA ENSGALG00000028600 1129.02 9088.55 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. GAPDH ENSGALG00000014442 1091.85 8789.33 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
14. KRT19 ENSGALG00000019719 905.97 7293.01 keratin 19 [Source:NCBI gene;Acc:395861]
15. NME2 ENSGALG00000002932 804.09 6472.88 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
16. RPL5 ENSGALG00000005922 670.53 5397.73 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
17. MDK ENSGALG00000008367 541.11 4355.91 midkine [Source:NCBI gene;Acc:423196]
18. RPL15 ENSGALG00000011290 531.47 4278.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
19. LUM ENSGALG00000011271 528.71 4256.09 lumican [Source:NCBI gene;Acc:417891]
20. RPL8 ENSGALG00000016232 499.80 4023.36 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
21. ENSGALG00000018384 ENSGALG00000018384 477.77 3846.02
22. RPL7A ENSGALG00000003197 440.60 3546.81 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. TMSB4X ENSGALG00000026383 435.09 3502.45 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
24. EIF4G2 ENSGALG00000005587 429.58 3458.10 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPS7 ENSGALG00000016392 429.58 3458.10 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL26 RPL26 419.94 3380.49
27. RPL7 ENSGALG00000035252 402.04 3236.40 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. RPL27A ENSGALG00000005948 380.01 3059.06 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. STMN1 ENSGALG00000001475 373.13 3003.68 stathmin 1 [Source:NCBI gene;Acc:396057]
30. ENO1 ENSGALG00000002377 369.00 2970.43 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. RPL18A 357.98 2881.72 ribosomal protein L18a
32. RPS3 ENSGALG00000017330 345.59 2781.98 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
33. S100A11 ENSGALG00000036711 345.59 2781.98 S100 calcium binding protein A11 [Source:NCBI gene;Acc:396075]
34. RPS4 RPS4 337.33 2715.49
35. ATP6V0C ENSGALG00000009229 334.58 2693.35 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
36. EEF1B2 ENSGALG00000008590 334.58 2693.35 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
37. RPS20 ENSGALG00000014432 334.58 2693.35 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
38. RPS11 ENSGALG00000017299 327.69 2637.89 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
39. DSP ENSGALG00000012790 324.94 2615.75 desmoplakin [Source:HGNC Symbol;Acc:HGNC:3052]
40. RPS16 ENSGALG00000026490 318.05 2560.28 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
41. RPS23 ENSGALG00000015617 313.92 2527.04 ribosomal protein S23
42. MT-ND2 MT-ND2 309.79 2493.79
43. CIRBP ENSGALG00000030918 308.42 2482.76 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
44. CRHOA CRHOA 308.42 2482.76
45. TPT1 ENSGALG00000028872 308.42 2482.76 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
46. RPL31 ENSGALG00000016775 297.40 2394.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
47. H3-IX H3-IX 296.02 2382.94
48. RPS10 ENSGALG00000002813 296.02 2382.94 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
49. ENSGALG00000028992 ENSGALG00000028992 287.76 2316.45
50. CNN3 ENSGALG00000005597 280.88 2261.07 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
51. RPS6 ENSGALG00000015082 280.88 2261.07 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
52. RPS27A ENSGALG00000036790 276.75 2227.82 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
53. EIF4EBP1 ENSGALG00000003205 275.37 2216.71 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
54. RPS24 ENSGALG00000004871 257.47 2072.62 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
55. RPS12 ENSGALG00000013990 256.10 2061.59 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
56. SLC25A6_1 ENSGALG00000016691 256.10 2061.59 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. RPL23 ENSGALG00000001634 253.34 2039.37 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
58. RPL21 ENSGALG00000027035 249.21 2006.13 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
59. RPL14 ENSGALG00000043379 247.83 1995.02 ribosomal protein L14
60. RPL4 ENSGALG00000007711 242.33 1950.74 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
61. RPSA 235.44 1895.28 ribosomal protein SA
62. ENSGALG00000018386 ENSGALG00000018386 234.07 1884.25
63. PNRC1 ENSGALG00000015780 228.56 1839.90 proline rich nuclear receptor coactivator 1 [Source:NCBI gene;Acc:421817]
64. RPL27 ENSGALG00000002837 218.92 1762.29 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
65. RPLP1 ENSGALG00000030878 214.79 1729.05 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
66. MT-ND6 MT-ND6 209.28 1684.69
67. ATP5G3 205.15 1651.45 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
68. RAN ENSGALG00000002569 205.15 1651.45 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
69. RPL32 ENSGALG00000027142 205.15 1651.45 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
70. RPS29 ENSGALG00000012229 205.15 1651.45 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
71. EIF1 ENSGALG00000028517 199.64 1607.09 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
72. RPS15A ENSGALG00000006771 199.64 1607.09 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
73. RPL23A ENSGALG00000003966 198.27 1596.06 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
74. RPL6 ENSGALG00000004818 191.38 1540.60 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
75. CALM CALM 188.63 1518.46
76. LDHB ENSGALG00000035836 185.88 1496.32 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
77. ANXA2 ENSGALG00000003770 184.50 1485.21 annexin A2 [Source:NCBI gene;Acc:396297]
78. HMGB1 ENSGALG00000042875 184.50 1485.21 high mobility group box 1 [Source:NCBI gene;Acc:395724]
79. RPS15 ENSGALG00000015195 184.50 1485.21 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
80. HBG1 HBG1 183.12 1474.11
81. RPS14 ENSGALG00000004588 180.37 1451.97 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
82. RPS3A ENSGALG00000010077 180.37 1451.97 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
83. NDUFB9 ENSGALG00000042242 177.61 1429.75 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
84. RPL35A ENSGALG00000007611, ENSGALG00000041230 177.61 1429.75 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
85. EIF3F ENSGALG00000005326 174.86 1407.61 eukaryotic translation initiation factor 3 subunit F
86. HMGN2 HMGN2 174.86 1407.61
87. NONO ENSGALG00000005507 173.48 1396.50 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
88. RPL10A ENSGALG00000002644 172.11 1385.48 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
89. EIF5A2 ENSGALG00000009309 170.73 1374.37 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
90. SNRPG ENSGALG00000028409 170.73 1374.37 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
91. ANP32B ENSGALG00000037483 167.98 1352.23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
92. RPL12 ENSGALG00000008806 167.98 1352.23 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
93. RPL36 ENSGALG00000000474 167.98 1352.23 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
94. RPL38 ENSGALG00000001465 167.98 1352.23 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
95. HMGN5 ENSGALG00000007131 166.60 1341.12 high mobility group nucleosome binding domain 5, transcript variant X1
96. TTR ENSGALG00000015143 166.60 1341.12 transthyretin [Source:NCBI gene;Acc:396277]
97. EIF4A2 ENSGALG00000008684 165.22 1330.01 eukaryotic translation initiation factor 4A2 [Source:NCBI gene;Acc:395232]
98. TCF12 ENSGALG00000004304 165.22 1330.01 transcription factor 12 [Source:NCBI gene;Acc:396334]
99. IGF2BP3 ENSGALG00000010961 162.47 1307.87 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
100. MEIS2 ENSGALG00000039118 162.47 1307.87 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA