Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s26.

Sample reads: 124,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-ATP6 MT-ATP6 5161.86 41551.27
2. MT-CO3 MT-CO3 4661.67 37524.91
3. MT-ND5 MT-ND5 3997.01 32174.61
4. MT-CYB MT-CYB 2310.16 18596.03
5. gga-mir-3527 gga-mir-3527 2259.28 18186.46
6. MT-CO1 MT-CO1 2244.29 18065.79
7. MT-ND1 MT-ND1 1917.64 15436.37
8. MT-ND4 MT-ND4 1839.95 14810.99
9. EEF1A EEF1A 1771.35 14258.78
10. gga-mir-3533 ENSGALG00000027736 1692.30 13622.46 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
11. GAPDH ENSGALG00000014442 1436.07 11559.89 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. MT-ND3 MT-ND3 1210.28 9742.36
13. PPIA ENSGALG00000028600 1100.34 8857.37 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. ENSGALG00000018384 ENSGALG00000018384 817.76 6582.70
15. MT-ND2 MT-ND2 724.62 5832.95
16. NME2 ENSGALG00000002932 655.11 5273.42 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. MDK ENSGALG00000008367 611.95 4926.00 midkine [Source:NCBI gene;Acc:423196]
18. RPL5 ENSGALG00000005922 539.27 4340.95 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
19. RPL8 ENSGALG00000016232 530.63 4271.40 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
20. RPL7 ENSGALG00000035252 525.64 4231.23 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. RPL15 ENSGALG00000011290 490.65 3949.57 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. EIF4G2 ENSGALG00000005587 475.66 3828.91 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
23. RPS3 ENSGALG00000017330 462.94 3726.51 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. RPL7A ENSGALG00000003197 442.04 3558.28 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
25. RPS7 ENSGALG00000016392 426.14 3430.29 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL27A ENSGALG00000005948 410.70 3306.00 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
27. CIRBP ENSGALG00000030918 410.24 3302.30 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
28. STMN1 ENSGALG00000001475 393.43 3166.98 stathmin 1 [Source:NCBI gene;Acc:396057]
29. ENO1 ENSGALG00000002377 373.90 3009.77 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
30. RPL26 RPL26 371.63 2991.50
31. RPS23 ENSGALG00000015617 361.18 2907.38 ribosomal protein S23
32. RPS4 RPS4 358.00 2881.78
33. RPL18A 344.37 2772.06 ribosomal protein L18a
34. LUM ENSGALG00000011271 343.91 2768.36 lumican [Source:NCBI gene;Acc:417891]
35. EEF1B2 ENSGALG00000008590 330.28 2658.65 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
36. RPS27A ENSGALG00000036790 328.01 2640.37 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
37. RPS20 ENSGALG00000014432 326.19 2625.72 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
38. RPS6 ENSGALG00000015082 313.93 2527.03 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
39. TMSB4X ENSGALG00000026383 310.75 2501.44 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
40. RPS11 ENSGALG00000017299 300.75 2420.94 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
41. RAN ENSGALG00000002569 296.21 2384.39 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
42. RPS16 ENSGALG00000026490 288.49 2322.25 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
43. RPL31 ENSGALG00000016775 285.76 2300.27 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
44. RPS15 ENSGALG00000015195 285.31 2296.65 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
45. ATP6V0C ENSGALG00000009229 283.03 2278.30 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
46. RPL21 ENSGALG00000027035 278.95 2245.46 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
47. SLC25A6_1 ENSGALG00000016691 262.59 2113.76 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
48. H3-IX H3-IX 262.14 2110.14
49. HMGN5 ENSGALG00000007131 261.68 2106.44 high mobility group nucleosome binding domain 5, transcript variant X1
50. RPL32 ENSGALG00000027142 261.68 2106.44 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
51. RPS10 ENSGALG00000002813 257.14 2069.89 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
52. RPS12 ENSGALG00000013990 256.23 2062.57 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
53. RPL4 ENSGALG00000007711 249.87 2011.37 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
54. CRHOA CRHOA 248.51 2000.42
55. RPSA 248.51 2000.42 ribosomal protein SA
56. HMGN2 HMGN2 248.05 1996.72
57. RPL23 ENSGALG00000001634 245.33 1974.83 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
58. TPT1 ENSGALG00000028872 243.96 1963.80 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
59. KRT19 ENSGALG00000019719 243.51 1960.18 keratin 19 [Source:NCBI gene;Acc:395861]
60. ENSGALG00000028992 ENSGALG00000028992 243.06 1956.55
61. ENSGALG00000018386 ENSGALG00000018386 240.78 1938.20
62. EIF1 ENSGALG00000028517 239.88 1930.95 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
63. ATP5G3 238.97 1923.63 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
64. RPL27 ENSGALG00000002837 238.97 1923.63 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
65. RPL14 ENSGALG00000043379 235.79 1898.03 ribosomal protein L14
66. RPS24 ENSGALG00000004871 235.79 1898.03 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
67. RPL3 ENSGALG00000012172 230.79 1857.78 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
68. RPL10A ENSGALG00000002644 230.33 1854.08 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
69. RPL13 ENSGALG00000006179 226.25 1821.24 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
70. RPS15A ENSGALG00000006771 223.52 1799.26 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
71. ANP32B ENSGALG00000037483 221.25 1780.99 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
72. H2AFZ ENSGALG00000014023 217.16 1748.07 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
73. RPS29 ENSGALG00000012229 215.34 1733.42 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
74. RPL38 ENSGALG00000001465 213.53 1718.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. CNN3 ENSGALG00000005597 213.07 1715.14 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
76. RPL23A ENSGALG00000003966 212.16 1707.82 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
77. EIF4EBP1 ENSGALG00000003205 206.71 1663.95 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
78. RPL6 ENSGALG00000004818 206.26 1660.33 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
79. FKBP4 ENSGALG00000014331 204.44 1645.67 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
80. HNRNPA3 ENSGALG00000009250 199.44 1605.43 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
81. HBE 193.54 1557.93 hemoglobin subunit epsilon
82. SNRPG ENSGALG00000028409 193.54 1557.93 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
83. EEF1D 192.17 1546.91 eukaryotic translation elongation factor 1 delta, transcript variant X13
84. RPL35A ENSGALG00000007611, ENSGALG00000041230 191.26 1539.58 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
85. EIF3F ENSGALG00000005326 190.81 1535.96 eukaryotic translation initiation factor 3 subunit F
86. ENSGALG00000002696 ENSGALG00000002696 189.45 1525.01
87. RPS8 ENSGALG00000010124 189.45 1525.01 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
88. RPL12 ENSGALG00000008806 188.08 1513.98 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
89. RPS14 ENSGALG00000004588 186.72 1503.03 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
90. LDHB ENSGALG00000035836 184.00 1481.14 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
91. RPL36 ENSGALG00000000474 183.54 1477.44 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
92. HNRNPDL ENSGALG00000023199 182.63 1470.11 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. ERH ENSGALG00000017384 182.18 1466.49 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
94. EIF5A2 ENSGALG00000009309 179.91 1448.22 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
95. RPS2 ENSGALG00000005490 176.73 1422.62 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
96. NONO ENSGALG00000005507 174.00 1400.64 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
97. RPS3A ENSGALG00000010077 170.82 1375.04 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
98. HMGB1 ENSGALG00000042875 169.46 1364.10 high mobility group box 1 [Source:NCBI gene;Acc:395724]
99. BTF3L4 ENSGALG00000010570 166.73 1342.12 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
100. IGF2BP3 ENSGALG00000010961 165.82 1334.80 insulin like growth factor 2 mRNA binding protein 3 [Source:NCBI gene;Acc:420617]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA