Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s24.

Sample reads: 124,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4826.66 38851.88
2. MT-ATP6 MT-ATP6 4341.01 34942.67
3. MT-ND5 MT-ND5 3545.75 28541.28
4. MT-CYB MT-CYB 2266.17 18241.39
5. EEF1A EEF1A 2054.90 16540.78
6. MT-CO1 MT-CO1 2052.91 16524.76
7. MT-ND4 MT-ND4 1856.92 14947.15
8. gga-mir-3527 gga-mir-3527 1716.74 13818.79
9. gga-mir-3533 ENSGALG00000027736 1692.16 13620.93 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
10. MT-ND1 MT-ND1 1581.87 12733.16
11. GAPDH ENSGALG00000014442 1503.47 12102.08 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
12. PPIA ENSGALG00000028600 1104.19 8888.10 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
13. NME2 ENSGALG00000002932 954.04 7679.48 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. MT-ND3 MT-ND3 938.76 7556.49
15. ENSGALG00000018384 ENSGALG00000018384 792.60 6379.98
16. MDK ENSGALG00000008367 669.02 5385.23 midkine [Source:NCBI gene;Acc:423196]
17. RPL5 ENSGALG00000005922 660.39 5315.77 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL8 ENSGALG00000016232 560.07 4508.25 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
19. MT-ND2 MT-ND2 501.60 4037.60
20. RPL26 RPL26 498.28 4010.87
21. RPL15 ENSGALG00000011290 489.64 3941.32 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPL7A ENSGALG00000003197 488.98 3936.01 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
23. RPL7 ENSGALG00000035252 465.72 3748.78 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
24. EIF4G2 ENSGALG00000005587 460.41 3706.04 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
25. RPS7 ENSGALG00000016392 439.81 3540.22 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. CIRBP ENSGALG00000030918 423.87 3411.91 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
27. STMN1 ENSGALG00000001475 418.55 3369.09 stathmin 1 [Source:NCBI gene;Acc:396057]
28. RPL27A ENSGALG00000005948 403.94 3251.49 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPL18A 397.29 3197.96 ribosomal protein L18a
30. ENO1 ENSGALG00000002377 386.00 3107.08 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. RPS20 ENSGALG00000014432 372.71 3000.10 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
32. RPS27A ENSGALG00000036790 370.72 2984.09 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
33. RPL23 ENSGALG00000001634 363.41 2925.24 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
34. RPS23 ENSGALG00000015617 358.76 2887.81 ribosomal protein S23
35. RPS4 RPS4 354.11 2850.39
36. RPS6 ENSGALG00000015082 343.48 2764.82 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPS16 ENSGALG00000026490 335.51 2700.67 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
38. RAN ENSGALG00000002569 334.18 2689.96 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
39. RPL31 ENSGALG00000016775 326.87 2631.12 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
40. ATP6V0C ENSGALG00000009229 323.55 2604.39 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
41. H3-IX H3-IX 312.92 2518.83
42. RPS10 ENSGALG00000002813 310.26 2497.42 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
43. EEF1B2 ENSGALG00000008590 300.96 2422.56 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
44. RPS11 ENSGALG00000017299 300.96 2422.56 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
45. RPS24 ENSGALG00000004871 299.63 2411.85 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
46. RPSA 294.32 2369.11 ribosomal protein SA
47. H2AFZ ENSGALG00000014023 293.65 2363.72 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
48. RPL4 ENSGALG00000007711 286.34 2304.87 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
49. RPS12 ENSGALG00000013990 285.68 2299.56 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
50. TMSB4X ENSGALG00000026383 284.35 2288.86 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
51. ATP5G3 275.05 2214.00 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
52. RPL21 ENSGALG00000027035 269.74 2171.25 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. FKBP4 ENSGALG00000014331 266.41 2144.45 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
54. RPS29 ENSGALG00000012229 261.76 2107.02 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
55. RPL35A ENSGALG00000007611, ENSGALG00000041230 259.11 2085.69 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
56. RPL32 ENSGALG00000027142 258.44 2080.30 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. HMGN5 ENSGALG00000007131 254.45 2048.18 high mobility group nucleosome binding domain 5, transcript variant X1
58. SNRPG ENSGALG00000028409 253.13 2037.55 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
59. CRHOA CRHOA 250.47 2016.14
60. EIF1 ENSGALG00000028517 250.47 2016.14 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
61. HMGN2 HMGN2 250.47 2016.14
62. RPS15 ENSGALG00000015195 248.48 2000.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
63. RPS3 ENSGALG00000017330 248.48 2000.12 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
64. RPL10A ENSGALG00000002644 245.82 1978.71 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
65. RPS15A ENSGALG00000006771 245.15 1973.32 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
66. ANP32B ENSGALG00000037483 240.50 1935.89 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
67. ENSGALG00000028992 ENSGALG00000028992 236.52 1903.85
68. SLC25A6_1 ENSGALG00000016691 235.19 1893.15 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
69. RPS14 ENSGALG00000004588 233.86 1882.44 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
70. RPL23A ENSGALG00000003966 231.87 1866.42 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
71. RPL36 ENSGALG00000000474 229.21 1845.01 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. LUM ENSGALG00000011271 227.22 1828.99 lumican [Source:NCBI gene;Acc:417891]
73. RPL14 ENSGALG00000043379 227.22 1828.99 ribosomal protein L14
74. EIF4EBP1 ENSGALG00000003205 225.22 1812.89 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
75. RPS3A ENSGALG00000010077 223.23 1796.88 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
76. ERH ENSGALG00000017384 220.57 1775.46 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
77. EEF1D 219.91 1770.15 eukaryotic translation elongation factor 1 delta, transcript variant X13
78. NONO ENSGALG00000005507 219.91 1770.15 non-POU domain containing octamer binding [Source:NCBI gene;Acc:428701]
79. TPT1 ENSGALG00000028872 213.26 1716.62 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
80. RPL27 ENSGALG00000002837 211.93 1705.92 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
81. NDUFB9 ENSGALG00000042242 205.29 1652.47 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
82. RPL13 ENSGALG00000006179 205.29 1652.47 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
83. RPL3 ENSGALG00000012172 203.96 1641.76 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
84. CNN3 ENSGALG00000005597 202.63 1631.06 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
85. RPL38 ENSGALG00000001465 201.30 1620.35 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
86. RPLP1 ENSGALG00000030878 199.98 1609.73 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
87. ENSGALG00000002696 ENSGALG00000002696 198.65 1599.02
88. LDHB ENSGALG00000035836 195.33 1572.30 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
89. ENSGALG00000018386 ENSGALG00000018386 194.66 1566.90
90. RPL12 ENSGALG00000008806 192.67 1550.88 ribosomal protein L12 [Source:NCBI gene;Acc:417264]
91. CDK1 ENSGALG00000003085 190.01 1529.47 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
92. HNRNPDL ENSGALG00000023199 188.02 1513.45 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
93. EIF5A2 ENSGALG00000009309 186.02 1497.36 eukaryotic translation initiation factor 5A [Source:NCBI gene;Acc:396545]
94. MIF ENSGALG00000006326 185.36 1492.04 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
95. SNRPE ENSGALG00000000137 185.36 1492.04 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
96. RPL6 ENSGALG00000004818 182.04 1465.32 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
97. BTF3L4 ENSGALG00000010570 179.38 1443.91 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
98. EIF3F ENSGALG00000005326 176.06 1417.18 eukaryotic translation initiation factor 3 subunit F
99. RPS2 ENSGALG00000005490 176.06 1417.18 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
100. YWHAZ ENSGALG00000031387 174.73 1406.48 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA