Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s23.

Sample reads: 124,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5578.02 44899.13
2. MT-ATP6 MT-ATP6 2858.52 23009.07
3. EEF1A EEF1A 2480.48 19966.12
4. MT-ND3 MT-ND3 2317.06 18650.70
5. MT-CYB MT-CYB 2302.43 18532.94
6. gga-mir-3527 gga-mir-3527 2121.94 17080.12
7. GAPDH ENSGALG00000014442 1895.11 15254.30 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. MT-ND5 MT-ND5 1870.72 15057.98
9. MT-CO1 MT-CO1 1824.38 14684.97
10. MT-ND4 MT-ND4 1739.02 13997.89
11. MT-ND1 MT-ND1 1258.53 10130.28
12. gga-mir-3533 ENSGALG00000027736 897.56 7224.73 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPL8 ENSGALG00000016232 860.97 6930.20 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
14. NME2 ENSGALG00000002932 807.31 6498.28 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. RPL7A ENSGALG00000003197 775.61 6243.11 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
16. RPS3 ENSGALG00000017330 746.34 6007.51 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
17. RPL5 ENSGALG00000005922 721.95 5811.19 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
18. RPL26 RPL26 687.80 5536.31
19. PPIA ENSGALG00000028600 573.17 4613.61 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
20. RPL7 ENSGALG00000035252 573.17 4613.61 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. RPS10 ENSGALG00000002813 568.29 4574.33 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
22. RPS4 RPS4 556.10 4476.21
23. RPL27A ENSGALG00000005948 546.34 4397.65 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
24. ENO1 ENSGALG00000002377 529.27 4260.25 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
25. RPS7 ENSGALG00000016392 521.95 4201.33 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
26. RPL31 ENSGALG00000016775 517.07 4162.05 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
27. RPS23 ENSGALG00000015617 478.05 3847.97 ribosomal protein S23
28. RPS20 ENSGALG00000014432 473.17 3808.69 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
29. RPS6 ENSGALG00000015082 470.73 3789.05 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
30. RPL23 ENSGALG00000001634 460.97 3710.48 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
31. RPS12 ENSGALG00000013990 448.78 3612.36 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
32. RPS16 ENSGALG00000026490 434.14 3494.52 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
33. TMSB4X ENSGALG00000026383 431.71 3474.96 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
34. RPS11 ENSGALG00000017299 419.51 3376.76 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
35. STMN1 ENSGALG00000001475 419.51 3376.76 stathmin 1 [Source:NCBI gene;Acc:396057]
36. RPL15 ENSGALG00000011290 407.32 3278.64 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
37. MT-ND2 MT-ND2 400.00 3219.72
38. RAN ENSGALG00000002569 397.56 3200.08 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
39. RPL18A 390.24 3141.16 ribosomal protein L18a
40. RPL27 ENSGALG00000002837 387.80 3121.52 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
41. ENSGALG00000018384 ENSGALG00000018384 380.49 3062.68
42. MDK ENSGALG00000008367 375.61 3023.40 midkine [Source:NCBI gene;Acc:423196]
43. RPS29 ENSGALG00000012229 375.61 3023.40 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
44. EIF4G2 ENSGALG00000005587 370.73 2984.12 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
45. RPS15 ENSGALG00000015195 370.73 2984.12 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
46. EEF1B2 ENSGALG00000008590 368.29 2964.48 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
47. RPL36 ENSGALG00000000474 368.29 2964.48 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
48. ENSGALG00000028992 ENSGALG00000028992 365.85 2944.83
49. RPS15A ENSGALG00000006771 365.85 2944.83 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
50. SNRPG ENSGALG00000028409 358.54 2885.99 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. CIRBP ENSGALG00000030918 336.58 2709.23 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
52. ENSGALG00000018386 ENSGALG00000018386 336.58 2709.23
53. H2AFZ ENSGALG00000014023 331.71 2670.03 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
54. RPL10A ENSGALG00000002644 326.83 2630.75 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
55. RPS24 ENSGALG00000004871 326.83 2630.75 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. RPS27A ENSGALG00000036790 319.51 2571.83 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
57. ENSGALG00000002696 ENSGALG00000002696 317.07 2552.19
58. H3-IX H3-IX 317.07 2552.19
59. NDUFB9 ENSGALG00000042242 317.07 2552.19 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
60. RPSA 312.19 2512.91 ribosomal protein SA
61. SLC25A6_1 ENSGALG00000016691 307.32 2473.71 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
62. RPS14 ENSGALG00000004588 304.88 2454.07 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. RPL32 ENSGALG00000027142 300.00 2414.79 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
64. RPL13 ENSGALG00000006179 290.24 2336.23 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
65. RPL21 ENSGALG00000027035 287.80 2316.59 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
66. RPL35A ENSGALG00000007611, ENSGALG00000041230 287.80 2316.59 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
67. RPL38 ENSGALG00000001465 285.36 2296.95 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
68. RPL14 ENSGALG00000043379 278.05 2238.11 ribosomal protein L14
69. RPL6 ENSGALG00000004818 278.05 2238.11 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
70. MIF ENSGALG00000006326 275.61 2218.47 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
71. RPLP1 ENSGALG00000030878 275.61 2218.47 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
72. RPL29 ENSGALG00000026978 265.85 2139.91 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
73. HMGN5 ENSGALG00000007131 263.41 2120.27 high mobility group nucleosome binding domain 5, transcript variant X1
74. RPL23A ENSGALG00000003966 248.78 2002.50 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
75. LUM ENSGALG00000011271 246.34 1982.86 lumican [Source:NCBI gene;Acc:417891]
76. CRHOA CRHOA 239.02 1923.94
77. EIF4EBP1 ENSGALG00000003205 239.02 1923.94 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
78. ATP5G3 236.58 1904.30 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
79. ERH ENSGALG00000017384 234.15 1884.74 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
80. RPS21 ENSGALG00000005338 234.15 1884.74 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
81. BTF3L4 ENSGALG00000010570 231.71 1865.10 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
82. LDHB ENSGALG00000035836 226.83 1825.82 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. FKBP4 ENSGALG00000014331 224.39 1806.18 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
84. KRT19 ENSGALG00000019719 224.39 1806.18 keratin 19 [Source:NCBI gene;Acc:395861]
85. TCEB3 ENSGALG00000034625 224.39 1806.18 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
86. RPS3A ENSGALG00000010077 221.95 1786.54 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
87. HMGB1 ENSGALG00000042875 214.63 1727.62 high mobility group box 1 [Source:NCBI gene;Acc:395724]
88. HSPE1 ENSGALG00000009070 212.19 1707.98 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
89. RPL9 ENSGALG00000000150 209.76 1688.42 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
90. RPL37A ENSGALG00000011472 204.88 1649.14 ribosomal protein L37a [Source:NCBI gene;Acc:769981]
91. ATP6V0C ENSGALG00000009229 200.00 1609.86 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
92. RPS8 ENSGALG00000010124 197.56 1590.22 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
93. SNRPE ENSGALG00000000137 195.12 1570.58 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
94. MEIS2 ENSGALG00000039118 190.24 1531.30 Meis homeobox 2 [Source:NCBI gene;Acc:395588]
95. RPL37 ENSGALG00000014833 190.24 1531.30 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
96. RPLP2 ENSGALG00000034811 187.80 1511.66 ribosomal protein lateral stalk subunit P2 [Source:HGNC Symbol;Acc:HGNC:10377]
97. CDK1 ENSGALG00000003085 185.37 1492.10 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
98. RPL36AL ENSGALG00000004952 180.49 1452.82 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
99. CNN3 ENSGALG00000005597 178.05 1433.18 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
100. HNRNPDL ENSGALG00000023199 178.05 1433.18 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA