Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s22.

Sample reads: 124,240. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 5204.16 41889.02
2. MT-ATP6 MT-ATP6 2552.88 20548.49
3. EEF1A EEF1A 2387.73 19219.18
4. MT-ND4 MT-ND4 2089.04 16814.98
5. MT-ND3 MT-ND3 2059.17 16574.55
6. MT-CYB MT-CYB 2032.82 16362.46
7. GAPDH ENSGALG00000014442 2020.52 16263.45 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
8. gga-mir-3527 gga-mir-3527 1992.41 16037.19
9. MT-CO1 MT-CO1 1973.08 15881.60
10. MT-ND5 MT-ND5 1611.15 12968.38
11. MT-ND1 MT-ND1 1305.43 10507.59
12. gga-mir-3533 ENSGALG00000027736 1024.32 8244.90 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
13. RPL8 ENSGALG00000016232 813.48 6547.82 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
14. RPL5 ENSGALG00000005922 811.72 6533.65 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. PPIA ENSGALG00000028600 732.66 5897.28 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPL7A ENSGALG00000003197 690.49 5557.85 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
17. NME2 ENSGALG00000002932 667.65 5374.01 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
18. RPS3 ENSGALG00000017330 660.62 5317.42 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
19. RPL26 RPL26 639.54 5147.75
20. RPL7 ENSGALG00000035252 616.70 4963.91 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
21. RPS4 RPS4 592.10 4765.90
22. RPL27A ENSGALG00000005948 558.72 4497.22 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
23. RPS7 ENSGALG00000016392 546.42 4398.21 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
24. RPS23 ENSGALG00000015617 534.12 4299.21 ribosomal protein S23
25. RPL15 ENSGALG00000011290 527.09 4242.62 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. ENSGALG00000018384 ENSGALG00000018384 504.25 4058.78
27. RPL18A 504.25 4058.78 ribosomal protein L18a
28. STMN1 ENSGALG00000001475 502.49 4044.61 stathmin 1 [Source:NCBI gene;Acc:396057]
29. RPS11 ENSGALG00000017299 493.71 3973.94 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
30. ENO1 ENSGALG00000002377 490.20 3945.69 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
31. RPL23 ENSGALG00000001634 484.92 3903.19 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
32. RPS10 ENSGALG00000002813 474.38 3818.35 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
33. RPS20 ENSGALG00000014432 442.76 3563.84 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
34. RPS6 ENSGALG00000015082 433.97 3493.09 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
35. RAN ENSGALG00000002569 428.70 3450.67 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
36. MT-ND2 MT-ND2 423.43 3408.25
37. EIF4G2 ENSGALG00000005587 421.67 3394.08 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
38. MDK ENSGALG00000008367 411.13 3309.24 midkine [Source:NCBI gene;Acc:423196]
39. RPS15 ENSGALG00000015195 407.62 3280.99 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
40. TMSB4X ENSGALG00000026383 404.10 3252.66 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
41. CIRBP ENSGALG00000030918 395.32 3181.99 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
42. RPL31 ENSGALG00000016775 395.32 3181.99 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
43. RPL27 ENSGALG00000002837 393.56 3167.82 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
44. EEF1B2 ENSGALG00000008590 386.53 3111.23 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
45. RPS12 ENSGALG00000013990 381.26 3068.82 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
46. RPL32 ENSGALG00000027142 379.51 3054.73 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
47. RPS15A ENSGALG00000006771 375.99 3026.40 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
48. RPL13 ENSGALG00000006179 368.96 2969.81 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
49. ENSGALG00000028992 ENSGALG00000028992 356.67 2870.89
50. RPL21 ENSGALG00000027035 354.91 2856.72 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
51. RPL6 ENSGALG00000004818 351.39 2828.39 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
52. RPSA 346.12 2785.97 ribosomal protein SA
53. SLC25A6_1 ENSGALG00000016691 346.12 2785.97 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
54. RPS29 ENSGALG00000012229 340.85 2743.55 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
55. RPS24 ENSGALG00000004871 337.34 2715.30 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
56. RPS16 ENSGALG00000026490 321.53 2588.04 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
57. RPL36 ENSGALG00000000474 312.74 2517.29 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
58. SNRPG ENSGALG00000028409 310.98 2503.12 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
59. RPL14 ENSGALG00000043379 309.23 2489.04 ribosomal protein L14
60. RPS14 ENSGALG00000004588 305.71 2460.70 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
61. HMGN5 ENSGALG00000007131 303.96 2446.62 high mobility group nucleosome binding domain 5, transcript variant X1
62. ATP5G3 293.41 2361.70 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
63. RPL10A ENSGALG00000002644 288.14 2319.28 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
64. HSPE1 ENSGALG00000009070 279.36 2248.61 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
65. H2AFZ ENSGALG00000014023 277.60 2234.44 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
66. RPS27A ENSGALG00000036790 277.60 2234.44 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
67. MIF ENSGALG00000006326 274.09 2206.19 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
68. RPL29 ENSGALG00000026978 274.09 2206.19 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
69. FKBP4 ENSGALG00000014331 270.57 2177.86 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
70. ENSGALG00000018386 ENSGALG00000018386 268.82 2163.77
71. RPS21 ENSGALG00000005338 261.79 2107.18 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
72. CNN3 ENSGALG00000005597 254.76 2050.60 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
73. ENSGALG00000002696 ENSGALG00000002696 254.76 2050.60
74. RPL38 ENSGALG00000001465 254.76 2050.60 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
75. H3-IX H3-IX 247.73 1994.01
76. RPL35A ENSGALG00000007611, ENSGALG00000041230 247.73 1994.01 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
77. RPLP1 ENSGALG00000030878 244.22 1965.76 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
78. RPL23A ENSGALG00000003966 240.71 1937.51 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
79. RPS3A ENSGALG00000010077 238.95 1923.34 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
80. LDHB ENSGALG00000035836 237.19 1909.18 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
81. RPL36AL ENSGALG00000004952 235.43 1895.01 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
82. ERH ENSGALG00000017384 233.68 1880.92 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
83. SNRPE ENSGALG00000000137 230.16 1852.59 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
84. RPS8 ENSGALG00000010124 228.41 1838.50 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
85. EIF4EBP1 ENSGALG00000003205 226.65 1824.34 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
86. RPL24 ENSGALG00000015339 224.89 1810.17 ribosomal protein L24 [Source:NCBI gene;Acc:418401]
87. KRT19 ENSGALG00000019719 214.35 1725.33 keratin 19 [Source:NCBI gene;Acc:395861]
88. LUM ENSGALG00000011271 214.35 1725.33 lumican [Source:NCBI gene;Acc:417891]
89. CRHOA CRHOA 209.08 1682.91
90. NDUFB9 ENSGALG00000042242 209.08 1682.91 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
91. BTF3L4 ENSGALG00000010570 203.81 1640.50 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
92. RPL4 ENSGALG00000007711 198.54 1598.08 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
93. RPL3 ENSGALG00000012172 196.78 1583.91 ribosomal protein L3 [Source:NCBI gene;Acc:418016]
94. TCEB3 ENSGALG00000034625 196.78 1583.91 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
95. HNRNPDL ENSGALG00000023199 195.02 1569.74 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
96. RPL37 ENSGALG00000014833 186.24 1499.07 ribosomal protein L37 [Source:NCBI gene;Acc:427186]
97. PRDX1 ENSGALG00000010243 182.73 1470.82 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
98. RPS2 ENSGALG00000005490 182.73 1470.82 ribosomal protein S2 [Source:NCBI gene;Acc:416544]
99. HNRNPA3 ENSGALG00000009250 177.45 1428.32 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
100. CDK1 ENSGALG00000003085 175.70 1414.23 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA