Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s21.

Sample reads: 124,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4176.70 33615.62
2. MT-ATP6 MT-ATP6 2989.81 24063.09
3. EEF1A EEF1A 2429.69 19555.04
4. MT-ND5 MT-ND5 2055.56 16543.90
5. MT-CO1 MT-CO1 1845.92 14856.64
6. GAPDH ENSGALG00000014442 1820.12 14648.99 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-CYB MT-CYB 1595.42 12840.53
8. MT-ND3 MT-ND3 1536.29 12364.63
9. gga-mir-3527 gga-mir-3527 1491.14 12001.24
10. MT-ND4 MT-ND4 1347.08 10841.79
11. gga-mir-3533 ENSGALG00000027736 1155.71 9301.58 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND1 MT-ND1 961.12 7735.45
13. NME2 ENSGALG00000002932 852.54 6861.56 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
14. PPIA ENSGALG00000028600 794.49 6394.35 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
15. RPL5 ENSGALG00000005922 709.55 5710.72 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
16. RPL8 ENSGALG00000016232 668.70 5381.94 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL7A ENSGALG00000003197 656.88 5286.81 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. RPL26 RPL26 613.87 4940.65
19. RPL7 ENSGALG00000035252 598.82 4819.52 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
20. RPS3 ENSGALG00000017330 590.22 4750.31 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
21. RPS7 ENSGALG00000016392 548.29 4412.84 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. MDK ENSGALG00000008367 534.32 4300.40 midkine [Source:NCBI gene;Acc:423196]
23. ENO1 ENSGALG00000002377 503.14 4049.46 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
24. RPL23 ENSGALG00000001634 498.84 4014.85 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
25. RPS4 RPS4 489.16 3936.94
26. STMN1 ENSGALG00000001475 476.26 3833.12 stathmin 1 [Source:NCBI gene;Acc:396057]
27. EIF4G2 ENSGALG00000005587 475.19 3824.50 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
28. RPL27A ENSGALG00000005948 467.66 3763.90 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
29. RPL18A 454.76 3660.08 ribosomal protein L18a
30. RPS10 ENSGALG00000002813 444.01 3573.56 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
31. RAN ENSGALG00000002569 440.78 3547.56 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
32. CIRBP ENSGALG00000030918 432.18 3478.34 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
33. RPS23 ENSGALG00000015617 431.11 3469.73 ribosomal protein S23
34. RPS15A ENSGALG00000006771 424.66 3417.82 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
35. RPS6 ENSGALG00000015082 409.61 3296.69 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
36. RPS16 ENSGALG00000026490 398.86 3210.17 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
37. RPL31 ENSGALG00000016775 394.56 3175.56 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
38. TMSB4X ENSGALG00000026383 392.41 3158.26 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
39. RPL15 ENSGALG00000011290 368.75 2967.84 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
40. RPS20 ENSGALG00000014432 366.60 2950.53 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
41. RPS11 ENSGALG00000017299 360.15 2898.62 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
42. EEF1B2 ENSGALG00000008590 350.48 2820.79 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
43. H3-IX H3-IX 349.40 2812.10
44. ENSGALG00000018384 ENSGALG00000018384 348.33 2803.49
45. RPSA 336.50 2708.28 ribosomal protein SA
46. RPS24 ENSGALG00000004871 327.90 2639.06 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
47. RPS12 ENSGALG00000013990 325.75 2621.76 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
48. FKBP4 ENSGALG00000014331 321.45 2587.15 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
49. RPL27 ENSGALG00000002837 318.22 2561.15 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
50. ENSGALG00000028992 ENSGALG00000028992 317.15 2552.54
51. RPL35A ENSGALG00000007611, ENSGALG00000041230 316.07 2543.85 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
52. SNRPG ENSGALG00000028409 315.00 2535.24 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
53. CRHOA CRHOA 302.10 2431.41
54. RPS29 ENSGALG00000012229 302.10 2431.41 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
55. H2AFZ ENSGALG00000014023 301.02 2422.72 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
56. RPL32 ENSGALG00000027142 299.95 2414.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
57. SLC25A6_1 ENSGALG00000016691 299.95 2414.11 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
58. RPL23A ENSGALG00000003966 293.50 2362.20 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
59. RPL14 ENSGALG00000043379 287.05 2310.28 ribosomal protein L14
60. ATP6V0C ENSGALG00000009229 285.97 2301.59 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
61. RPS27A ENSGALG00000036790 282.75 2275.68 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
62. RPS14 ENSGALG00000004588 281.67 2266.98 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
63. MT-ND2 MT-ND2 278.45 2241.07
64. RPL21 ENSGALG00000027035 278.45 2241.07 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
65. LDHB ENSGALG00000035836 270.92 2180.46 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
66. NDUFB9 ENSGALG00000042242 270.92 2180.46 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
67. ENSGALG00000002696 ENSGALG00000002696 269.85 2171.85
68. ATP5G3 268.77 2163.16 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
69. HSPE1 ENSGALG00000009070 264.47 2128.55 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
70. MIF ENSGALG00000006326 261.25 2102.64 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
71. RPL36 ENSGALG00000000474 258.02 2076.64 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
72. LUM ENSGALG00000011271 256.94 2067.95 lumican [Source:NCBI gene;Acc:417891]
73. HMGN5 ENSGALG00000007131 250.49 2016.04 high mobility group nucleosome binding domain 5, transcript variant X1
74. EIF4EBP1 ENSGALG00000003205 237.59 1912.21 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
75. ERH ENSGALG00000017384 237.59 1912.21 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
76. RPL10A ENSGALG00000002644 235.44 1894.91 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
77. ENSGALG00000018386 ENSGALG00000018386 231.14 1860.30
78. RPL38 ENSGALG00000001465 231.14 1860.30 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
79. SNRPE ENSGALG00000000137 227.92 1834.38 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
80. KRT19 ENSGALG00000019719 226.84 1825.69 keratin 19 [Source:NCBI gene;Acc:395861]
81. RPS3A ENSGALG00000010077 224.69 1808.39 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
82. RPS15 ENSGALG00000015195 222.54 1791.08 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
83. RPL13 ENSGALG00000006179 220.39 1773.78 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
84. RPS21 ENSGALG00000005338 219.32 1765.17 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
85. TCEB3 ENSGALG00000034625 219.32 1765.17 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
86. EIF1 ENSGALG00000028517 218.24 1756.48 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
87. BTF3L4 ENSGALG00000010570 217.17 1747.86 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
88. CNN3 ENSGALG00000005597 213.94 1721.87 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
89. RPL6 ENSGALG00000004818 213.94 1721.87 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
90. RPLP1 ENSGALG00000030878 213.94 1721.87 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
91. RPL4 ENSGALG00000007711 208.57 1678.65 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
92. TPT1 ENSGALG00000028872 202.12 1626.74 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
93. HNRNPDL ENSGALG00000023199 198.89 1600.74 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
94. RPL36AL ENSGALG00000004952 195.67 1574.82 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
95. HNRNPA3 ENSGALG00000009250 192.44 1548.83 heterogeneous nuclear ribonucleoprotein A3 [Source:HGNC Symbol;Acc:HGNC:24941]
96. RPL29 ENSGALG00000026978 190.29 1531.52 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
97. ATP6V1G1 ENSGALG00000007190 183.84 1479.61 ATPase H+ transporting V1 subunit G1 [Source:NCBI gene;Acc:417249]
98. PRDX1 ENSGALG00000010243 181.69 1462.31 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
99. ANP32B ENSGALG00000037483 179.54 1445.00 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
100. CDK1 ENSGALG00000003085 174.16 1401.70 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA