Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Chicken_E3_posterior_slice_3, section s20.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4308.65 34679.56
2. MT-ATP6 MT-ATP6 2816.24 22667.42
3. MT-ND5 MT-ND5 2126.49 17115.74
4. EEF1A EEF1A 2100.19 16904.06
5. gga-mir-3527 gga-mir-3527 2016.68 16231.90
6. GAPDH ENSGALG00000014442 1953.27 15721.52 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-CYB MT-CYB 1812.54 14588.81
8. MT-ND4 MT-ND4 1749.13 14078.44
9. MT-CO1 MT-CO1 1537.26 12373.13
10. MT-ND3 MT-ND3 1512.51 12173.92
11. gga-mir-3533 ENSGALG00000027736 1342.39 10804.66 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND1 MT-ND1 1147.53 9236.26
13. RPL5 ENSGALG00000005922 818.12 6584.90 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
14. NME2 ENSGALG00000002932 804.20 6472.86 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
15. PPIA ENSGALG00000028600 794.92 6398.17 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
16. RPL8 ENSGALG00000016232 700.58 5638.84 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
17. RPL7A ENSGALG00000003197 686.66 5526.80 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. ENSGALG00000018384 ENSGALG00000018384 657.28 5290.33
19. RPL27A ENSGALG00000005948 562.94 4531.00 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
20. RPL26 RPL26 539.74 4344.27
21. RPL15 ENSGALG00000011290 533.55 4294.45 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
22. RPS7 ENSGALG00000016392 502.62 4045.50 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
23. STMN1 ENSGALG00000001475 502.62 4045.50 stathmin 1 [Source:NCBI gene;Acc:396057]
24. RPS10 ENSGALG00000002813 482.52 3883.72 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
25. RPS23 ENSGALG00000015617 474.79 3821.50 ribosomal protein S23
26. RPL31 ENSGALG00000016775 460.87 3709.46 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
27. RPL7 ENSGALG00000035252 454.68 3659.64 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
28. CIRBP ENSGALG00000030918 451.59 3634.77 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
29. RPS4 RPS4 450.04 3622.29
30. RPS20 ENSGALG00000014432 448.50 3609.90 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
31. EIF4G2 ENSGALG00000005587 446.95 3597.42 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
32. ENO1 ENSGALG00000002377 439.22 3535.20 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
33. RAN ENSGALG00000002569 434.58 3497.86 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
34. RPL23 ENSGALG00000001634 425.30 3423.16 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
35. RPS29 ENSGALG00000012229 425.30 3423.16 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
36. ENSGALG00000028992 ENSGALG00000028992 414.47 3336.00
37. RPS11 ENSGALG00000017299 412.92 3323.52 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
38. RPS3 ENSGALG00000017330 400.55 3223.96 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
39. RPS6 ENSGALG00000015082 397.46 3199.08 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
40. MT-ND2 MT-ND2 395.91 3186.61
41. TMSB4X ENSGALG00000026383 394.37 3174.21 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
42. MDK ENSGALG00000008367 392.82 3161.74 midkine [Source:NCBI gene;Acc:423196]
43. RPL18A 383.54 3087.05 ribosomal protein L18a
44. ENSGALG00000018386 ENSGALG00000018386 375.81 3024.83
45. RPS15 ENSGALG00000015195 372.72 2999.96 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
46. RPS15A ENSGALG00000006771 355.70 2862.97 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
47. RPS16 ENSGALG00000026490 354.16 2850.57 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
48. RPS14 ENSGALG00000004588 352.61 2838.10 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
49. EEF1B2 ENSGALG00000008590 344.88 2775.88 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
50. H3-IX H3-IX 334.05 2688.71
51. RPSA 334.05 2688.71 ribosomal protein SA
52. H2AFZ ENSGALG00000014023 315.49 2539.32 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
53. RPL27 ENSGALG00000002837 309.31 2489.58 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
54. RPS12 ENSGALG00000013990 309.31 2489.58 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
55. RPL32 ENSGALG00000027142 307.76 2477.11 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
56. HMGN5 ENSGALG00000007131 304.67 2452.23 high mobility group nucleosome binding domain 5, transcript variant X1
57. RPL21 ENSGALG00000027035 301.57 2427.28 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
58. RPL14 ENSGALG00000043379 296.93 2389.94 ribosomal protein L14
59. SLC25A6_1 ENSGALG00000016691 292.30 2352.67 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
60. ATP5G3 290.75 2340.20 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
61. FKBP4 ENSGALG00000014331 290.75 2340.20 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
62. RPS24 ENSGALG00000004871 290.75 2340.20 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
63. RPL13 ENSGALG00000006179 289.20 2327.72 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
64. ENSGALG00000002696 ENSGALG00000002696 287.66 2315.32
65. RPS27A ENSGALG00000036790 278.38 2240.63 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
66. CRHOA CRHOA 272.19 2190.81
67. MIF ENSGALG00000006326 272.19 2190.81 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
68. KRT19 ENSGALG00000019719 267.55 2153.46 keratin 19 [Source:NCBI gene;Acc:395861]
69. NDUFB9 ENSGALG00000042242 267.55 2153.46 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
70. ERH ENSGALG00000017384 266.00 2140.99 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
71. RPL6 ENSGALG00000004818 262.91 2116.12 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
72. SNRPG ENSGALG00000028409 261.36 2103.64 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
73. RPL23A ENSGALG00000003966 258.27 2078.77 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
74. RPL10A ENSGALG00000002644 253.63 2041.42 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
75. RPS3A ENSGALG00000010077 250.54 2016.55 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
76. RPL4 ENSGALG00000007711 248.99 2004.08 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
77. RPL29 ENSGALG00000026978 247.45 1991.68 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
78. RPL36 ENSGALG00000000474 247.45 1991.68 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
79. RPL38 ENSGALG00000001465 245.90 1979.21 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
80. RPLP1 ENSGALG00000030878 241.26 1941.86 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
81. RPL35A ENSGALG00000007611, ENSGALG00000041230 239.71 1929.38 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
82. RPS21 ENSGALG00000005338 239.71 1929.38 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
83. HSPE1 ENSGALG00000009070 238.17 1916.99 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
84. EEF1D 235.07 1892.04 eukaryotic translation elongation factor 1 delta, transcript variant X13
85. BTF3L4 ENSGALG00000010570 227.34 1829.82 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
86. ATP6V0C ENSGALG00000009229 225.79 1817.34 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
87. RPS8 ENSGALG00000010124 225.79 1817.34 ribosomal protein S8 [Source:NCBI gene;Acc:424584]
88. EIF4EBP1 ENSGALG00000003205 218.06 1755.13 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
89. LDHB ENSGALG00000035836 205.69 1655.56 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
90. HSPA8 ENSGALG00000006512 202.60 1630.69 heat shock 70kDa protein 8 [Source:NCBI gene;Acc:395853]
91. TPT1 ENSGALG00000028872 202.60 1630.69 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
92. RPL9 ENSGALG00000000150 197.96 1593.34 ribosomal protein L9 [Source:NCBI gene;Acc:425468]
93. TCEB3 ENSGALG00000034625 197.96 1593.34 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
94. SNRPE ENSGALG00000000137 196.41 1580.87 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
95. ANP32B ENSGALG00000037483 194.86 1568.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
96. HNRNPDL ENSGALG00000023199 191.77 1543.52 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
97. LUM ENSGALG00000011271 184.04 1481.31 lumican [Source:NCBI gene;Acc:417891]
98. RPL36AL ENSGALG00000004952 184.04 1481.31 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
99. CNN3 ENSGALG00000005597 180.94 1456.35 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
100. PRDX1 ENSGALG00000010243 180.94 1456.35 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA