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Experiment Chicken_E3_posterior_slice_3, section s18.

Sample reads: 124,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. MT-CO3 MT-CO3 4356.66 35066.29
2. MT-ATP6 MT-ATP6 2886.98 23236.99
3. EEF1A EEF1A 2209.64 17785.15
4. MT-ND5 MT-ND5 2122.74 17085.71
5. MT-CYB MT-CYB 1874.81 15090.14
6. GAPDH ENSGALG00000014442 1833.91 14760.94 glyceraldehyde-3-phosphate dehydrogenase [Source:NCBI gene;Acc:374193]
7. MT-CO1 MT-CO1 1759.79 14164.36
8. MT-ND4 MT-ND4 1741.90 14020.37
9. gga-mir-3527 gga-mir-3527 1671.61 13454.61
10. MT-ND3 MT-ND3 1524.64 12271.66
11. gga-mir-3533 ENSGALG00000027736 1299.71 10461.23 gga-mir-3533 [Source:miRBase;Acc:MI0015386]
12. MT-ND1 MT-ND1 1272.88 10245.27
13. PPIA ENSGALG00000028600 888.20 7149.03 peptidylprolyl isomerase A [Source:NCBI gene;Acc:776282]
14. RPL5 ENSGALG00000005922 766.79 6171.81 ribosomal protein L5 [Source:NCBI gene;Acc:395269]
15. RPL8 ENSGALG00000016232 761.68 6130.68 ribosomal protein L8 [Source:NCBI gene;Acc:418568]
16. NME2 ENSGALG00000002932 644.11 5184.37 NME/NM23 nucleoside diphosphate kinase 2 [Source:NCBI gene;Acc:395916]
17. RPL7A ENSGALG00000003197 584.04 4700.87 ribosomal protein L7a [Source:NCBI gene;Acc:417158]
18. RPL26 RPL26 550.81 4433.41
19. RPL7 ENSGALG00000035252 540.59 4351.15 ribosomal protein L7 [Source:NCBI gene;Acc:420182]
20. RPL27A ENSGALG00000005948 527.81 4248.29 ribosomal protein L27a [Source:NCBI gene;Acc:770018]
21. RPS7 ENSGALG00000016392 511.20 4114.59 ribosomal protein S7 [Source:HGNC Symbol;Acc:HGNC:10440]
22. ENO1 ENSGALG00000002377 508.64 4093.99 enolase 1, (alpha) [Source:NCBI gene;Acc:396017]
23. RPS3 ENSGALG00000017330 506.08 4073.38 ribosomal protein S3 [Source:NCBI gene;Acc:419069]
24. CIRBP ENSGALG00000030918 504.81 4063.16 cold inducible RNA binding protein [Source:NCBI gene;Acc:425789]
25. RPL15 ENSGALG00000011290 492.03 3960.30 ribosomal protein L15 [Source:NCBI gene;Acc:428442]
26. RPL23 ENSGALG00000001634 480.52 3867.65 Gallus gallus ribosomal protein L23 (RPL23), mRNA. [Source:RefSeq mRNA;Acc:NM_001321599]
27. RPS10 ENSGALG00000002813 456.24 3672.23 ribosomal protein S10 [Source:NCBI gene;Acc:419904]
28. EIF4G2 ENSGALG00000005587 449.85 3620.79 eukaryotic translation initiation factor 4 gamma 2 [Source:NCBI gene;Acc:395905]
29. RAN ENSGALG00000002569 440.91 3548.84 RAN, member RAS oncogene family [Source:NCBI gene;Acc:396193]
30. RPS20 ENSGALG00000014432 434.52 3497.40 ribosomal protein S20 [Source:HGNC Symbol;Acc:HGNC:10405]
31. RPS4 RPS4 434.52 3497.40
32. STMN1 ENSGALG00000001475 417.90 3363.63 stathmin 1 [Source:NCBI gene;Acc:396057]
33. RPS23 ENSGALG00000015617 401.29 3229.94 ribosomal protein S23
34. ENSGALG00000018384 ENSGALG00000018384 392.34 3157.90
35. RPL18A 391.06 3147.60 ribosomal protein L18a
36. RPS6 ENSGALG00000015082 373.17 3003.61 ribosomal protein S6 [Source:NCBI gene;Acc:396148]
37. RPS29 ENSGALG00000012229 352.72 2839.01 ribosomal protein S29 [Source:NCBI gene;Acc:776054]
38. RPL31 ENSGALG00000016775 351.45 2828.78 ribosomal protein L31 [Source:NCBI gene;Acc:418710]
39. MDK ENSGALG00000008367 348.89 2808.18 midkine [Source:NCBI gene;Acc:423196]
40. TMSB4X ENSGALG00000026383 347.61 2797.88 Gallus gallus thymosin beta 4, X-linked (TMSB4X), mRNA. [Source:RefSeq mRNA;Acc:NM_001001315]
41. RPS12 ENSGALG00000013990 346.33 2787.57 ribosomal protein S12 [Source:NCBI gene;Acc:421698]
42. H2AFZ ENSGALG00000014023 341.22 2746.44 H2A histone family, member Z [Source:NCBI gene;Acc:426361]
43. RPS16 ENSGALG00000026490 341.22 2746.44 ribosomal protein S16 [Source:HGNC Symbol;Acc:HGNC:10396]
44. RPS15 ENSGALG00000015195 337.39 2715.62 ribosomal protein S15 [Source:NCBI gene;Acc:396448]
45. RPSA 333.55 2684.71 ribosomal protein SA
46. FKBP4 ENSGALG00000014331 332.28 2674.49 FK506 binding protein 4 [Source:NCBI gene;Acc:418261]
47. MT-ND2 MT-ND2 313.11 2520.19
48. HMGN5 ENSGALG00000007131 311.83 2509.89 high mobility group nucleosome binding domain 5, transcript variant X1
49. RPS11 ENSGALG00000017299 309.27 2489.28 ribosomal protein S11 [Source:NCBI gene;Acc:419049]
50. SNRPG ENSGALG00000028409 309.27 2489.28 small nuclear ribonucleoprotein polypeptide G [Source:NCBI gene;Acc:771344]
51. ENSGALG00000018386 ENSGALG00000018386 305.44 2458.45
52. RPL21 ENSGALG00000027035 305.44 2458.45 ribosomal protein L21 [Source:HGNC Symbol;Acc:HGNC:10313]
53. RPS15A ENSGALG00000006771 304.16 2448.15 ribosomal protein S15a [Source:HGNC Symbol;Acc:HGNC:10389]
54. RPL27 ENSGALG00000002837 290.10 2334.98 ribosomal protein L27 [Source:NCBI gene;Acc:396280]
55. H3-IX H3-IX 287.55 2314.46
56. SLC25A6_1 ENSGALG00000016691 287.55 2314.46 solute carrier family 25 member 6 [Source:NCBI gene;Acc:374072]
57. RPL38 ENSGALG00000001465 284.99 2293.85 ribosomal protein L38 [Source:NCBI gene;Acc:771528]
58. RPS14 ENSGALG00000004588 281.16 2263.03 ribosomal protein S14 [Source:NCBI gene;Acc:416275]
59. ENSGALG00000028992 ENSGALG00000028992 279.88 2252.72
60. EEF1B2 ENSGALG00000008590 277.32 2232.12 Gallus gallus eukaryotic translation elongation factor 1 beta 2 (EEF1B2), mRNA. [Source:RefSeq mRNA;Acc:NM_204901]
61. RPL23A ENSGALG00000003966 277.32 2232.12 ribosomal protein L23a [Source:HGNC Symbol;Acc:HGNC:10317]
62. RPL6 ENSGALG00000004818 273.49 2201.29 ribosomal protein L6 [Source:NCBI gene;Acc:373957]
63. RPL13 ENSGALG00000006179 269.66 2170.46 ribosomal protein L13 [Source:NCBI gene;Acc:395849]
64. RPL32 ENSGALG00000027142 268.38 2160.16 ribosomal protein L32 [Source:NCBI gene;Acc:416122]
65. RPS24 ENSGALG00000004871 264.54 2129.25 ribosomal protein S24 [Source:NCBI gene;Acc:423726]
66. RPS27A ENSGALG00000036790 263.27 2119.03 ribosomal protein S27a [Source:NCBI gene;Acc:395796]
67. BTF3L4 ENSGALG00000010570 261.99 2108.73 basic transcription factor 3 like 4 [Source:NCBI gene;Acc:424638]
68. ERH ENSGALG00000017384 256.88 2067.60 ERH, mRNA splicing and mitosis factor [Source:NCBI gene;Acc:423262]
69. NDUFB9 ENSGALG00000042242 256.88 2067.60 NADH:ubiquinone oxidoreductase subunit B9 [Source:HGNC Symbol;Acc:HGNC:7704]
70. RPL10A ENSGALG00000002644 255.60 2057.30 ribosomal protein L10a [Source:HGNC Symbol;Acc:HGNC:10299]
71. CNN3 ENSGALG00000005597 253.04 2036.69 Gallus gallus calponin 3 (CNN3), mRNA. [Source:RefSeq mRNA;Acc:NM_001354671]
72. RPL35A ENSGALG00000007611, ENSGALG00000041230 251.76 2026.39 ribosomal protein L35a [Source:NCBI gene;Acc:424924]
73. ATP6V0C ENSGALG00000009229 250.49 2016.17 ATPase H+ transporting V0 subunit c [Source:NCBI gene;Acc:416753]
74. ATP5G3 249.21 2005.86 ATP synthase, H+ transporting, mitochondrial Fo complex subunit C3 (subunit 9), transcript variant 3
75. RPL36 ENSGALG00000000474 249.21 2005.86 ribosomal protein L36 [Source:NCBI gene;Acc:373936]
76. ENSGALG00000002696 ENSGALG00000002696 247.93 1995.56
77. RPL14 ENSGALG00000043379 242.82 1954.43 ribosomal protein L14
78. CRHOA CRHOA 241.54 1944.13
79. RPLP1 ENSGALG00000030878 241.54 1944.13 ribosomal protein lateral stalk subunit P1 [Source:NCBI gene;Acc:396262]
80. KRT19 ENSGALG00000019719 236.43 1903.00 keratin 19 [Source:NCBI gene;Acc:395861]
81. RPS3A ENSGALG00000010077 236.43 1903.00 ribosomal protein S3A [Source:NCBI gene;Acc:422477]
82. LDHB ENSGALG00000035836 226.20 1820.66 lactate dehydrogenase B [Source:NCBI gene;Acc:373997]
83. RPL29 ENSGALG00000026978 223.65 1800.13 ribosomal protein L29 [Source:NCBI gene;Acc:770249]
84. HNRNPDL ENSGALG00000023199 222.37 1789.83 heterogeneous nuclear ribonucleoprotein D like [Source:NCBI gene;Acc:422601]
85. SNRPE ENSGALG00000000137 222.37 1789.83 small nuclear ribonucleoprotein polypeptide E [Source:NCBI gene;Acc:396180]
86. CDK1 ENSGALG00000003085 218.54 1759.00 cyclin dependent kinase 1 [Source:NCBI gene;Acc:396252]
87. RPS21 ENSGALG00000005338 217.26 1748.70 ribosomal protein S21 [Source:HGNC Symbol;Acc:HGNC:10409]
88. ANP32B ENSGALG00000037483 208.31 1676.66 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:NCBI gene;Acc:420087]
89. RPL36AL ENSGALG00000004952 203.20 1635.53 ribosomal protein L36a like [Source:HGNC Symbol;Acc:HGNC:10346]
90. MIF ENSGALG00000006326 201.92 1625.23 macrophage migration inhibitory factor (glycosylation-inhibiting factor) [Source:NCBI gene;Acc:100857237]
91. PRDX1 ENSGALG00000010243 201.92 1625.23 peroxiredoxin 1 [Source:NCBI gene;Acc:424598]
92. TCEB3 ENSGALG00000034625 201.92 1625.23 transcription elongation factor B subunit 3 [Source:NCBI gene;Acc:419683]
93. EIF1 ENSGALG00000028517 199.37 1604.71 eukaryotic translation initiation factor 1 [Source:NCBI gene;Acc:420037]
94. HSPE1 ENSGALG00000009070 199.37 1604.71 heat shock protein family E (Hsp10) member 1 [Source:NCBI gene;Acc:395948]
95. EIF4EBP1 ENSGALG00000003205 187.86 1512.06 eukaryotic translation initiation factor 4E binding protein 1 [Source:HGNC Symbol;Acc:HGNC:3288]
96. RPL4 ENSGALG00000007711 187.86 1512.06 ribosomal protein L4 [Source:NCBI gene;Acc:415551]
97. CCT6 CCT6 185.31 1491.54
98. TPT1 ENSGALG00000028872 185.31 1491.54 tumor protein, translationally-controlled 1 [Source:NCBI gene;Acc:396363]
99. HMGB1 ENSGALG00000042875 182.75 1470.94 high mobility group box 1 [Source:NCBI gene;Acc:395724]
100. YWHAZ ENSGALG00000031387 181.47 1460.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein zeta [Source:NCBI gene;Acc:425619]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA